Strigops habroptila (Kakapo): 115615162
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Entry
115615162 CDS
T08851
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03250
Viral life cycle - HIV-1
shab04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115615162 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
115615162 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shab03400
]
115615162 (SAMHD1)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
115615162 (SAMHD1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
DDE_Tnp_2
ODP
PDEase_I
Motif
Other DBs
NCBI-GeneID:
115615162
NCBI-ProteinID:
XP_030358872
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Position
13:complement(12230388..12254090)
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AA seq
613 aa
AA seq
DB search
MGSPAGGGWGAAPAKRARRGVSRGPAAEGDGCDPRRWDTERLCQHLARCGLGEPGLLRRF
REHGVTASMLLDLPAGAFEATRVCLPAERLKVLACLDKLQQQHMDMMKVFNDPIHGHIEI
HPLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSIGVGYLAGCLVRALKERQPE
LDITQRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLTHPDWKWKHETASVKMFEHLITSN
KLEEVMESYGLVLEEDMDFIKEQIGGPTDEAACEISWPYRGRPKEKSFLYEVVANKKNGI
DVDKWDYFARDCHHLGIQNNFDYKRLLKFIRVCEVKNQRHICTRDKEVGNLYDMFHTRNC
LHRRAYQHKIGNIIEIMITEALLKADKFFKIEGSGGKQYQISTAVEDMEAYTKLTDNIYL
EILHSSSPELKEAREILRKIERRELYKFLGETQPKTRSEIVQNNSLAESIAKSKPEKDPP
NVELKAEDFVVDVINMDYGMKEQNPIDNVLFYCKADPSKAVKISKEQVSKLLPRTFAEQV
IRVYCKHQDPDIVSAAKQYFIQWCIENNFTKPPDSDVVAPHLIPMKESWNNARDDGHWTT
PEPSCEQRLPFDK
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggggagccctgcggggggcggctggggcgcggctcccgccaagcgcgcgcggcgcggg
gtgtcgcgcggccccgcggcggagggtgacggctgcgacccgcggcgctgggacacggag
cggctctgccagcacctggcgcggtgcggcctgggcgagcccggcctcctgcgccgcttc
cgagagcacggagtcaccgcgagcatgctgctggacctgcccgctggcgccttcgaggcc
acgcgtgtctgcctcccagctgagagactgaaagttttggcctgcctggacaaactgcaa
cagcagcacatggatatgatgaaggtttttaacgatcccattcatgggcacatcgaaata
catccccttctggttcgcatcatcgacacaccacagtttcagcgcctcagatacattaag
cagctgggtggcacttactttgtttttccaggagcctctcacaaccgctttgaacactct
ataggggtgggctacttagcaggatgtctggttcgtgcactgaaggagagacaaccagaa
ctggatataacccagcgagacatcctttgtgtagaaattgctgggctttgtcatgatttg
ggtcatgggccattttcacacatgtttgatggaagatttattccactcactcatccagat
tggaagtggaagcatgaaactgcttctgttaaaatgtttgagcacctgatcacttccaat
aaactagaagaagtcatggagtcgtatggtcttgtcctggaagaagatatggacttcatc
aaggaacaaataggaggacctacagatgaagctgcatgtgagatatcgtggccctatcgt
ggtcgaccaaaggagaaaagtttcctgtatgaggtagtagctaacaagaaaaatggcatt
gacgttgacaaatgggattattttgccagggattgccatcacctaggaatccagaataat
tttgattataagcgattacttaaatttattcgggtctgtgaagtaaaaaaccagaggcac
atctgtacccgtgacaaggaagttggaaatttgtatgatatgttccacacccggaattgc
ctgcaccggcgagcgtaccagcataagattggcaacatcattgaaataatgattacagaa
gcccttctgaaagcagacaagttttttaaaatagaaggctctggaggaaaacagtaccag
atttctacagcagtggaggacatggaggcctacactaagctaactgataatatctacctg
gaaattctgcactcaagttctccagagctgaaggaggcacgagaaatcttgcgtaaaata
gaacgacgtgaattatacaagtttttgggagagactcagcctaaaacaaggagtgaaatt
gtacagaataacagcctggcagaaagcattgctaaatccaagccagaaaaggatcctcca
aatgtggaactaaaggctgaagattttgtagttgatgttatcaatatggattatggaatg
aaagaacagaatcccattgataatgttctcttctattgcaaggctgatccttccaaggca
gtcaaaatcagtaaagagcaggtttcaaagctgttacccaggacctttgctgagcaggtt
attcgggtttattgcaaacatcaggatccagatattgtttcagctgcaaaacagtatttt
attcagtggtgcatagagaataatttcaccaaaccaccggatagtgatgtggttgcccct
catctaattccaatgaaggaaagctggaataacgcaagggatgatggacactggacaact
ccagaacccagctgtgaacagaggcttccttttgataagtaa
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