Spiribacter halobius: LMH63_14885
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Entry
LMH63_14885 CDS
T09389
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shai
Spiribacter halobius
Pathway
shai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMH63_14885 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shai03021
]
LMH63_14885 (rpoB)
03400 DNA repair and recombination proteins [BR:
shai03400
]
LMH63_14885 (rpoB)
Enzymes [BR:
shai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMH63_14885 (rpoB)
Transcription machinery [BR:
shai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMH63_14885 (rpoB)
DNA repair and recombination proteins [BR:
shai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMH63_14885 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
UEX77221
LinkDB
All DBs
Position
complement(3160579..3164643)
Genome browser
AA seq
1354 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKQPNILDVPFLLATQIESYRDFLQLERDPDSRDGKGLHAAFSSV
FPIQSYSGNARLEYVRYRIGEPAFDVKECQLRGLTYAAPLRVLVRLVINDKETRTVKDIK
EQEVYMGEMPLMTRNGTFVVNGTERVIVQQLHRSPGVFFDHDKGKTHSSGKLLFSARVIP
YRGSWLDFEFDPKDAIYVRIDRRRKLPATVLLRALGYDNEQILDLFFEKNQFKLKKKGAE
LALVPDRLRGETASFDIKAGGETIVESGRRITARHIRQMEKVGLDKLEVPDEYLVGKVLA
HGIVDKSTGEVLAEANAELTEELVQQLRDAGVKSFETLFINDLDQGPYVSNTLRIDATRT
QLEALVEIYRMMRPGEPPTKEAAENLFANLFFSEDRYDLSSVGRMKFNLRVGRDEVTGSG
VLDNEDILDVLRELINIRNGKGTVDDIDHLGNRRVRCVGEMAENVFRVGLVRVERAVRER
LSLAESEGLMPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGL
TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLISSLACYARLNSYGFLETPYRKVIDGR
VTDEVDYLSAIEESRYVIAQANARLDENGYLADSLISMRHQNEFGMASPEKVQYMDVSPK
QIVSVAASMVPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERAVAIDSGVTVIA
ERGGVVEQVDAARMVVRVNDDETVPGEPGVDIYNLTKYTRSNQNTCQNQKPLVRPGDQVA
RGDVLADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILMSEKVVEEDRYTTIHIEELTA
VARDTKLGPEEITADIPNVGESALAKLDESGIVYVGAEVNAGDILVGKVTPKGETQLTPE
EKLLRAIFGEKASDVKDTSQRVPTGMDGTVVDVQVFTRDGVEKDARALSIEADALAAVRK
DLNDQFRIFEDDAFARLEKLLDGKVAEGGPNGLKAGTKVTPEYLQGVERERWFEIRMRDD
DVTEQLEKVQAQLKAQREAFDRRFDEKKAKITAGDDLAPGVLKMVKVYLAVKRRIQPGDK
LAGRHGNKGVISRVVPVEDMPFTEDGEPIDVVLSPLGVPSRMNVGQVLETHLGWAAKGLG
QKIGRMLDEQVELAELRRFLDQIYNSSGKREDLDSLTDEEIRSLADNLRGGVPMASPVFD
GADETEVKTMLRLAELPENGQTTLYDGRTGEAFDRPVTIGYMHILKLNHLVDDKVHARST
GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYKNI
VDGDHQMEAGMPESFNVLVKEIRSLGIDIELEQD
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcgttcaccgaaaagaagcgcatccgcaaggacttcggcaagcagccgaat
atcctggatgtccctttcctgctcgcgacgcagatcgagtcctaccgggacttcctgcag
ctcgagcgcgacccggacagccgtgacggcaagggcctgcacgccgcgttcagctcagtg
ttcccgatccagagctactctggcaatgcccgtctggaatacgtgcgctatcgcatcggc
gagccggccttcgacgtcaaggagtgccagctgcgcgggctgacctacgccgccccgctg
cgcgtgctcgtgcgcctggtcatcaacgacaaggagacgcgcacggtcaaggacatcaag
gagcaggaagtctacatgggcgagatgccgctcatgacccgcaacggcaccttcgtggtg
aacggtaccgagcgggtcatcgtgcagcagctgcaccgctcgccgggcgtgttcttcgac
cacgacaagggcaagacccacagctccggcaagctgctgttcagcgcgcgggtcattccc
tatcgcggctcatggctcgacttcgagttcgacccgaaggacgccatctacgtgcgcatc
gaccgccgccgcaagctgccggcgacggtgctgctgcgcgcgctcggctacgacaacgag
cagatcctcgacctgttcttcgagaagaaccagttcaagctgaagaagaagggcgccgag
ctggcgctcgtgccggaccgcctgcgcggcgagaccgcgagcttcgacatcaaggccggc
ggcgagaccatcgtcgagagcgggcggcggattaccgcgcgccacatccggcagatggag
aaggtgggcctggacaagctcgaggtccctgacgagtacctcgtgggcaaggtgctcgcc
cacggcatcgtcgacaagtccaccggcgaggtgctggccgaggccaatgccgagctcacc
gaggagctggtgcagcagctgcgcgacgccggggtgaagtccttcgagacgctgttcatc
aacgatctcgaccaggggccctacgtttccaacaccctgcgcatcgacgccacgcgcacg
cagctcgaggcgctggtggagatctaccggatgatgcgcccgggcgagccgccgaccaag
gaggccgcggagaacctgttcgccaacctgttcttcagcgaggaccgctacgacctgtcc
tcggtggggcggatgaagttcaacctgcgggtcggccgggacgaggtcaccggctccggc
gtgctggacaacgaggacatcctcgacgtcctgcgcgagctcatcaacatccgcaacggc
aagggcacggtcgacgacatcgaccacctcggcaaccggcgggtgcgctgtgtcggcgag
atggcggagaacgtcttccgcgtggggctcgtgcgcgtggagcgcgccgtgcgcgagcgc
ctgagcctcgccgagagcgaggggctgatgccccaggagctgatcaacgccaagcccgtg
gcggcggcgatcaaggagttcttcggctcctcgcagctctcgcagttcatggaccagaac
aacccgctctccgaggtgacccacaagcgccgggtctcggcgctcggcccgggcggcctg
acccgcgagcgggcgggcttcgaggtgcgcgacgtgcacccgacccactacggccgcgtc
tgccccatcgagacgccggaggggccgaacatcggcctcatctcctcgctcgcctgctat
gcccggctcaacagctacggcttcctggagacgccgtaccgcaaggtgatcgacggccgc
gtcaccgacgaggtggactatctctccgccatcgaggagagccgctacgtcatcgcccag
gccaacgcgcgcctggacgagaacggctatctggcggattcgctgatctccatgcgccac
cagaacgagttcggcatggcctcgccggagaaggtccagtacatggacgtctcgccgaag
cagatcgtctcggtggcggcctccatggtgccgttcctcgagcacgacgacgccaaccgc
gcgctcatgggctcgaacatgcagcgccaggcggtgccgacgctgcgcgccgagaagccc
ctggtgggcaccggcatggagcgcgccgtcgccatcgactccggcgtcaccgtgatcgcc
gagcgcggcggtgtggtggagcaggtggacgccgcgcgcatggtggtgcgggtcaacgac
gacgagaccgtccccggcgagcccggcgtcgacatctacaacctgaccaagtacacgcgc
tccaaccagaacacctgccagaaccagaagccgctggtgcgcccgggcgaccaggtggcc
cggggcgacgtcctcgccgacggcccgtccacggacatgggcgagctggcgctcgggcag
aacatgcgcgtcgccttcatgccctggaacggctacaacttcgaggactccatcctcatg
tccgagaaggtggtggaggaggaccgctacaccaccatccacatcgaggagctcaccgcc
gtcgcccgtgacaccaagctcgggccggaggagatcaccgccgacatccccaacgtcggc
gagagcgcgctcgccaagctggacgagtcgggcatcgtctacgtgggcgccgaggtcaac
gcgggcgacatcctcgtcggcaaggtcacgcccaagggcgagacccagctcacccccgag
gagaagctgctgcgggcgatcttcggcgagaaggcctcggacgtgaaggacacctcccag
cgcgtgcccacgggcatggacggcacggtggtggacgtccaggtgttcacccgcgacggc
gtcgagaaggatgcccgcgccctgtccatcgaggcggatgcgctggccgcggtgcgcaag
gacctgaacgaccagttccgcatcttcgaggacgacgccttcgcccgcctcgagaagctg
ctggacggcaaggtcgccgagggcggcccgaacggcctcaaggccggcaccaaggtcacg
cccgagtacctgcagggcgtcgagcgggagcgctggttcgagatccgcatgcgtgacgac
gacgtcaccgagcagctggagaaggtgcaggcccagctcaaggcccagcgcgaggccttc
gaccgccgcttcgacgagaagaaggccaagatcaccgccggcgacgacctcgcccccggt
gtgctgaagatggtcaaggtctacctcgcggtgaagcggcggatccagccgggcgacaag
ctcgccgggcgccacggcaacaagggcgtgatctcgcgcgtggtgccggtggaggacatg
cccttcaccgaggacggcgagcccatcgacgtggtgctctcgccgctgggcgtgccctcg
cggatgaacgtcggccaggtgctggagacccacctcggctgggccgccaagggcctcggc
cagaagatcggccgcatgctggacgagcaggtggagctcgccgagctgcgccggttcctc
gaccagatctacaactccagcggcaagcgcgaggacctcgacagcctcaccgacgaggag
atccgcagcctggcggacaacctgcgcggcggcgtgcccatggcctcgccggtgttcgac
ggcgccgacgagaccgaggtcaagaccatgctgcggctggcggagctgccggagaacggc
cagaccacgctctacgacggccgcaccggtgaggccttcgaccgcccggtgaccatcggc
tacatgcacatcctgaagctgaaccacctggtggacgacaaggtccatgcccgctccacc
ggtccgtacagcctggtcacccagcagccgctgggcggcaaggcccagttcggcggccag
cgcttcggcgagatggaggtctgggcgctggaggcctacggcgcggcgtacacgctgcag
gagatgctcacggtgaagtccgacgacgtgaccggccgcaccaagatgtacaagaacatc
gtggacggcgaccaccagatggaggcggggatgcccgaatccttcaacgtgctggtcaag
gagatccggtcgctcggtatcgatatcgagctggagcaggattga
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integrated database retrieval system
