Sphingomonas hankookensis: PPZ50_01825
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Entry
PPZ50_01825 CDS
T08811
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shan
Sphingomonas hankookensis
Pathway
shan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPZ50_01825 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shan03400
]
PPZ50_01825 (ligD)
Enzymes [BR:
shan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPZ50_01825 (ligD)
DNA repair and recombination proteins [BR:
shan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPZ50_01825 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WCP72326
LinkDB
All DBs
Position
complement(370559..372961)
Genome browser
AA seq
800 aa
AA seq
DB search
MARKSDPLATYNAKRDFARTAEPAGTLAKGQGNRFVVQKHDATRLHYDFRLEVDGVLKSW
AVTRGPSLDPDQKRLAVRTEDHPLDYAGFEGVIPAGEYGGGTVMLWDEGTWSPVAGKSAT
DLKKGHLHFVLAGTRMRGEWLLVRLKPRGKEKRENWLLRKVADGEAGGTDTLTATMLTSV
TTGRTMEEIAESKPAPRKVAAEAKRPAFVEPQLATLVDAVPTGGEWLHEVKYDGYRILIA
TGGTGPRLYTRTGLDWTAKFPGIAEAAASLPPGLLLDGEVVALKDGKPDFSTLQAAIKDG
GEMRCFAFDLLRDADGDRRDEALVRRKERLQRVLAGADPRIAYSDHVTGSGEKLFAAMCA
EGFEGIVSKRADAPYRGTRSRSWLKVKCTHRQEFVILGWLPSEAKGRPFKSLLLGVQEEG
GLRYAGKVGTGFDAANMAEVAAALAPLARKTPPVELPAVQRRGARWVTPKLVAEIAFAEF
TADGLVRHASFIALRGDKAAKDVVRETPVAADAAPAVRISHPERVIFPGDRLTKGDLAAY
VERVAPLLLPAAADRPLSLVRCPQGRGKACFFQKHDAGSFGDAVHAIDIAEKEGKREPYL
YVRDAAGLLSCVQMGTIEFHGWGSGVGDVERPDRMVFDLDPDEGLDFADVKRAAHDISRH
LGDLGLASFAMLSGGKGVHVVVPLTPQAEWPTVKDFADRFSRALAQAEPDRFVATMAKAK
RKGRIFIDWLRNQRGSTAVLPYSARARTGAPVAAPVAWRELDDIDSAGRWTIRDADELLK
RADSRLLTGWGVADQVLPDR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcaagtccgatccgctggccacctataacgccaagcgcgatttcgcgcgcacc
gccgagccagcggggacgctggccaaggggcaaggcaaccgcttcgtcgtgcagaagcat
gacgccacacggctacactatgatttccggctggaggtggacggggtgctcaaaagctgg
gcggtgacgcgcggacccagtctcgaccccgatcagaagcggctggcggtacgcaccgag
gatcatccgctcgattatgccgggttcgaaggggtgatcccggcgggcgaatatggcggc
ggcacggtgatgttgtgggacgagggcacctggtcgccggtcgcgggcaaatcggcgacg
gatttgaagaaggggcatctccatttcgtgctggcgggcacgcggatgcgcggcgaatgg
ctgctggtccggctcaagccccgtggcaaggagaagcgcgagaactggctgttgcgcaag
gtcgccgatggggaagcgggcggcaccgacacgctgactgcaacgatgctgaccagcgtg
accaccgggcggacgatggaggagattgccgagagcaagcccgccccgcgcaaggtggcg
gccgaagcgaagcgcccggcgttcgtcgaaccgcagcttgcgacgttggtcgatgcggtg
ccgacgggcggcgaatggctgcacgaggtgaaatatgacggttatcgcatcctgatcgcg
accggtggcaccggtcccagactctacacccgcaccgggctggactggacggcgaagttt
cccggcattgccgaggcggcggcaagcctgccgccgggcctgttgctcgatggcgaggtg
gtcgcgctgaaagacggcaagcccgatttctcgaccttgcaggcggcgatcaaggacggt
ggggaaatgcgctgcttcgccttcgacctgctgcgcgatgccgatggcgaccgacgcgac
gaggcgctggtgcggcgcaaggagcggttgcagcgggtgctggccggggccgatccgcgc
atcgcctattccgaccatgtcaccgggtcgggcgagaagctgttcgcggcgatgtgtgcg
gaggggttcgaggggatcgtgtcgaagcgcgccgatgccccctatcgcggcacccgctcg
cgcagctggctgaaggtcaaatgcacccatcggcaggaattcgtcatcctcggctggctg
ccgagcgaggcgaaggggcggccgttcaagtcgttgttgctgggtgtgcaggaggaaggc
ggcctgcgctatgccggcaaggtcggcaccggattcgacgcggcgaacatggcggaggtg
gcggcggcactggccccgctggcgcgcaagacgccaccagtcgagctgcccgccgtgcaa
cgccggggtgcgcgctgggtcacgccgaagctggtggcggagatcgcctttgccgaattc
accgccgacgggctggtgcgccatgcgagcttcattgccttgcggggggacaaggcggcc
aaggacgtggtgcgcgaaacgccggtcgccgccgatgccgcgccggcggtgcgcatcagc
catcccgagcgggtgatctttcccggcgaccggctgaccaagggcgatctggcagcctat
gtcgagcgggtcgcgccgttgctgctgcccgcagccgccgaccggccgctcagcctggtg
cgctgtccgcaggggcggggcaaggcgtgcttcttccagaaacacgacgccggcagcttc
ggcgatgcggtccatgcgatcgatattgcggagaaggaggggaagcgcgaaccgtatctc
tatgtccgcgatgccgccgggctgctgtcctgcgtgcagatggggacgatcgaattccat
ggctggggatcgggcgtcggcgatgtcgagcggcccgaccggatggtgttcgacctcgat
cccgacgaggggctggactttgccgatgtgaagcgcgcggcacatgatatcagccggcat
ctgggcgatctggggctggcgagcttcgcgatgctgtcgggcggcaagggggtccatgtc
gtcgttcccctcaccccgcaagccgagtggccgacggtcaaggatttcgccgaccgcttc
tcccgcgcgctggcgcaggccgagccggaccgcttcgtagcgacgatggcgaaggcgaag
cggaaaggacgcatcttcatcgactggctgcgcaaccagcgcggcagtaccgccgtgcta
ccctattcggcccgcgcaaggaccggcgcgccggtggcggccccggtcgcgtggcgcgag
ctggacgacatcgacagcgcaggccgctggacgatccgcgacgccgacgaactgctgaag
cgcgccgacagccgactgctgaccggctggggcgtcgcggatcaggtgttgccggaccgg
taa
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