Streptomyces harbinensis: HUT13_11900
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Entry
HUT13_11900 CDS
T07389
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shar
Streptomyces harbinensis
Pathway
shar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUT13_11900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shar03400
]
HUT13_11900 (mfd)
Enzymes [BR:
shar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUT13_11900 (mfd)
DNA repair and recombination proteins [BR:
shar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUT13_11900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QKV69411
UniProt:
A0A1I6VAS7
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Position
complement(2681412..2684963)
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AA seq
1183 aa
AA seq
DB search
MSLHGLLDAVTEDPALAEAVAAARGGDRRQVDLVGPPAARALSVAALARGAGRTVLAVTA
TGREAEDLAAALRSLLPPDGVVEYPSWETLPHERLSPRADTVGRRLAVLRRLAHPRTDDP
GAGPVSVVVAPIRSVLQPQVAGLGDLEPVSLRGGQSVELGRLTEALAAAAYQRVELVEKR
GEFAVRGGIVDVFPPTEEHPLRVELWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDAVRERAAALAEEHPELGELLGRIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMTV
VCDPERVRSRAADLVATSQEFLMASWAASAGGGEAPIDVGAASLRGIAEVREHAAELGMP
WWTVSPFSADASAEAEEDTVRLGLRAAESYRGDTARALADTKGWLADGWRVVYLTEGQGP
ASRTAEVLTGEGIAARLAHRGLEAGAITPAVVHVACGALEHGFTDPALRLAVLTETDLTG
QKAAGRDGTRMPARRRKTLDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEY
APAKRGQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLI
KLYSARMAAPGHAFGPDTPWQRELEDAFPYAETPDQLTTIGEVKDDMEKSVPMDRLICGD
VGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQHFGTFSERYAQFPVAVRALSRFQSE
TDSKAVLEGLRDGSVDVVIGTHRLFSSEVKFKDLGLVIVDEEQRFGVEHKEQLKKLRANV
DVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAALRRELLRE
GQVFYIHNRVDSIDRAAARLRAIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTT
IVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPERPLTETAHER
LATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAT
LEAGGGEPEESLLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAANTEEDIAAVREELT
DRYGPLPEPVENLLLVAGLRMLARSCGVGDITLQGNKIRFSPVELRESQELRLNRVYPGS
VVKRAAGQVLVPRPTTGKIGGKPLTGRELLAWTGEFLTTIPGS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggcctgctcgatgccgtcaccgaagaccccgccctcgccgaggcggtc
gccgccgcgcgcggcggcgaccggcggcaggtcgatctcgtcgggccgcccgccgcgcgg
gcgctgtccgtcgccgcactggcgcggggcgccgggcgcaccgtgctggcggtgacggcc
accggccgcgaggccgaggacctggccgccgcgctgcgctcgctgctgccgccggacggc
gtggtcgagtacccctcctgggagacgctgccgcacgagcggctgtcgccgcgcgccgac
accgtcggccgccggctggccgtcctgcggcgcctcgcccacccccgtaccgacgacccc
ggcgcgggcccggtctccgtggtggtcgcgccgatccgctcggtcctccagccgcaggtc
gccgggctcggcgacctggagccggtgagcctgcgcggcgggcagagcgtggagctgggg
cggctcaccgaggcgctggccgccgccgcgtaccagcgggtggagctggtggagaagcgc
ggcgagttcgcggtgcgcggcggcatcgtggacgtcttcccgcccaccgaggagcacccg
ctgcgggtggagctgtggggcgacgaggtcgaggagatccggtacttcaaggtcgccgac
cagcggtccctggagatcgccgagcacggcctgtgggcgccgccgtgccgggaactgctg
ctgaccgacgcggtgcgcgagcgggccgccgcgctggccgaggagcacccggagctgggc
gagctgctgggcaggatcgccgagggcatcgcggtggagggcatggagtcgctcgccccg
gtgctggtggacgacatggaactgctgctggacgtgctgcccgccgggtcgatgacggtg
gtgtgcgatccggagcgggtccgctcccgggccgccgacctggtggccaccagccaggag
ttcctgatggcctcctgggcggcgagcgcgggcggcggcgaggcgcccatcgacgtcggc
gcggcctcgctgcgcgggatcgcggaggtgcgcgagcacgcggcggagctgggcatgccg
tggtggacggtcagcccgttcagcgcggacgcctccgccgaggcggaggaggacaccgta
cggctggggctgcgcgccgccgagtcctaccggggcgacacggcgcgggcgctggccgac
accaagggctggctggccgacggctggcgcgtggtctacctcaccgagggccagggcccg
gcctcccgtaccgccgaggtgctgaccggcgagggcatcgcggcccggctggcgcaccgg
ggcctggaggccggcgcgatcaccccggccgtcgtccatgtggcgtgcggcgcgctcgaa
cacggcttcaccgatccggcgctgcggctcgcggtgctcaccgagaccgacctgaccggc
cagaaggcggcgggccgggacggcacccggatgccggccaggcggcgcaagacactggac
ccgctgaccctggaggcgggcgactacatcgtgcacgagcagcacggggtgggccgctac
atcgagatggtgcagcgcaccgtccagggcgccacccgtgagtacctgctggtggagtac
gcgccggccaagcgcggccagcccggcgaccggctgttcgtgccgaccgaccagctggag
caggtcaccaagtacgtgggcggcgaggcgccgacgctgcaccggctgggcggtgcggac
tggaccaagaccaaggcgcgggcgaagaaggcggtcaaggagatcgccgccgatctgatc
aagctgtactcggcgcggatggcggcccccgggcacgcgttcggcccggacaccccgtgg
cagcgggagctggaggacgccttcccgtacgccgagacccccgatcagctgaccacgatc
ggcgaggtcaaggacgacatggagaagtcggtcccgatggaccggctgatctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggagggc
aagcaggtggcggtgctggtgccgaccacgctgctggtgcagcagcacttcggcacgttc
tcggagcggtacgcgcagttcccggtggcggtgcgggcgctgtcccgcttccagtcggag
accgactccaaggcggtgctggaggggctgcgggacggctcggtggacgtggtgatcggc
acccaccggctgttctcctcggaggtgaagttcaaggacctcggcctggtgatcgtggac
gaggagcagcggttcggcgtcgagcacaaggagcagctgaagaagctgcgggcgaacgtg
gacgtgctgacgatgtcggcgacgccgatcccgcgcaccctggagatggcggtgaccggc
atccgggagatgtcgacgatcaccacgccgccggaggagcggcacccggtgctgacgttc
gtcggcccgtacgaggagaagcagatcggggcggcgctgcggcgtgagctgctgcgcgag
ggccaggtcttctacatccacaaccgggtggactccatcgaccgggcggcggcgcggctg
cgggcgatcgtgccggaggcgcggatcgcgacggcgcacgggcagatgagcgagtcggcg
ctggagcaggtggtggtggacttctgggagaagaagttcgacgtgctggtgtccacgacg
atcgtggagtccgggatcgacatctccaacgccaacaccctgatcgtcgagcgcggtgac
accttcggtctgtcccagctgcaccagctgcgcggccgggtgggccggggccgggagcgc
ggctacgcgtacttcctgtacccgccggagcgtccgctgacggagaccgcgcacgagcgg
ctggccaccatcgcgcagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggac
ctggagatccggggcgcgggcaatctgctgggcggggagcagtccgggcacatcgcgggc
gtgggcttcgacctgtatgtgcggatggtcggcgaggcggtggcggactaccgggcgacg
ctggaggccggcggcggcgagccggaggagtcgctgcttgaggtgaagatcgagctgccg
gtggacgcccatgtgccgcacgactacgcgccgggggagcggctgcggctccaggcgtac
cggtcgatcgcggcggcgaacaccgaggaggacatcgcggcggtgcgcgaggagctgacg
gaccgctacgggccgctgccggagccggtggagaacctgctgctggtggcggggctgcgg
atgctggcgcgctcgtgcggggtgggggacatcacgctccaggggaacaagatccgcttc
tcgccggtggagctgcgggagtcgcaggagctgcggctgaaccgggtgtacccgggttcg
gtggtgaagcgggcggccgggcaggtgctggtgccgcgcccgacgaccgggaagatcggc
gggaagccgctgaccgggcgggagctgctggcgtggacgggtgagttcctgaccacgatc
ccggggtcctga
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