Streptomyces halobius: K9S39_26945
Help
Entry
K9S39_26945 CDS
T09588
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shau
Streptomyces halobius
Pathway
shau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9S39_26945 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shau03400
]
K9S39_26945 (mfd)
Enzymes [BR:
shau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9S39_26945 (mfd)
DNA repair and recombination proteins [BR:
shau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K9S39_26945 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
SLFN-g3_helicase
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UQA95008
LinkDB
All DBs
Position
5875567..5879166
Genome browser
AA seq
1199 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVQAAADGHRPHVDLVGPPAARAFAVAALARESGRPVLAVTA
TGREAEDLAAALRTLMPAGEEHSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLTHPRE
DDPSAGPVSVVVAPIRSVLQPQVKGLGELEPVSLRTGDSADLEEIVDRLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTEDVRTRAADLAEQHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAASAGGGAAPIDVGAASLRGIADVRERAREL
GMMWWSVSQFTSGDIERSTSGDIEHSAADEGLSSELDGDTLKLGMHAPDTYRGDTARALA
DTKQWLADGWRTVFVTEAHGPAARTVEVLGGEGIAARFDGELTAIGPSVVHVACGSLDNG
FIDPSLKLAVLTETDLTGQKAAGKDGARMPARRRKQIDLLTLQAGDFIVHEQHGVGRYIE
MVQRTVQGATREYLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWT
KTKARAKKAVKEIAADLIKLYSARMAAPGHSFGPDTPWQRELEDAFAYVETPDQLTTIAE
VKEDMRKSVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHYGTFTE
RYGQFPVNVRALSRFQTDTEAKAVLEGLRDGSVDLVIGTHRLFSSETKFKDLGLVIVDEE
QRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVG
PYEQKQIGAAIRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESRLE
QVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGY
AYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVG
FDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIA
SASTEQDIAAVREELTDRYGKLPEPVENLLLVAGLRMLARSCGVADITLQGSNVRFGPVE
LRESQELRLKRLYPRTVIKPATQQVLVPRPTTGKIGGKPLVGRELLAWVGEFLTTVLGS
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtg
caggccgcggccgacggccaccggccgcatgtggacctggtgggcccgcccgccgcccgc
gccttcgcggtggccgcgctggcccgggaatccggccgcccggtcctcgcggtgaccgcc
accggccgggaggccgaggatctggccgccgcgctgcgcaccctgatgccggccggtgag
gaacactccgtggtggagttcccgtcctgggagacgctgccgcacgagcgtctctcgccg
cgctcggacaccgtcggccgccgcctcgcggtgctgcgccggctcactcacccgcgcgag
gacgacccgagcgccggccccgtctccgtcgtcgtcgcccccatccgctccgtgctgcag
ccgcaggtcaaggggctgggcgagctggagccggtgagcctgcggacgggcgacagcgcc
gacctcgaagagatcgtcgacaggctggcggcggccgcctacgcgcgcgtcgaactggtc
gagaagcgcggtgagttcgccgtccgcggcggcatcctcgatgtcttcccgcccaccgag
gagcacccgctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcggtccctggaggtcgccgagcacggtctgtgggcgccgccgtgccgg
gagctgctgctgaccgaggacgtccgcacgcgggccgccgatctcgccgagcagcacccg
gagctgggcgagctgctgggcaagatcgccgagggcatcgcggtggagggcatggagtcc
ctggctccggtcctggtcgacgagatggagctgctgctggatgtgctgcccaaggggtcg
atggccgtggtgtgcgacccggagcgggtgcgcacgcgggccgccgacctggtggcgacg
agccaggagttcctgcaggcgtcctgggccgcgagcgccggcggcggggcggcgccgatc
gatgtgggcgcggcctccctgaggggcatcgcggacgtccgggagcgagcccgcgaactg
ggcatgatgtggtggtcggtcagtcagttcacctctggtgacatcgagcgcagcacctcc
ggtgacatcgagcacagtgccgcggacgaggggctgtcatcggagctcgacggcgacacc
ctcaagctgggcatgcacgcccccgacacctaccgtggcgacaccgcgcgggcgctcgcc
gacaccaagcagtggctcgccgacggctggcgcacggtgttcgtcaccgaggcacacggc
cccgcggcccgtaccgtcgaggtgctcggcggcgagggcatcgccgcccggttcgacgga
gaactcaccgcgatcggcccgtccgtcgtccatgtcgcctgcggctccctcgacaacggc
ttcatcgacccgtcgctcaagctggccgtgctgaccgagaccgacctcaccggccagaag
gcggccggcaaggacggggcccggatgccggcccgccgccgtaagcagatcgacctgctc
accctccaggccggcgacttcatcgtccacgagcagcacggcgtcggccgctacatcgag
atggtgcagcgcaccgtccagggcgccacccgcgagtacctcctcgtcgagtacgcgccg
gccaagcgcggccagcccggcgaccgcctctacatccccaccgaccagctggagcaggtc
accaagtacgtgggcggcgaggcgccgacgctgcaccggctcggcggcgccgactggacg
aagaccaaggcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctcatcaagctc
tactccgcgcggatggcggcgcccggccactccttcggcccggacaccccctggcagcgt
gagctggaggacgcgttcgcgtacgtggagacgcccgatcagctcaccaccatcgccgag
gtcaaggaggacatgcggaagtcggttccgatggaccggctgatctgcggcgatgtcggt
tacggaaagaccgagatcgcggtccgggcggccttcaaggcgattcaggacggcaagcag
gtggccgtcctggtccccaccaccctcctcgtccagcagcactacggcaccttcaccgag
cgctacggccagttcccggtcaacgtcagggcgctgtcccgtttccagaccgacaccgag
gccaaggctgtcctggaggggctgcgcgacggctccgtcgacctggtcatcggcacccac
cggctcttctcctccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggaa
cagcggttcggcgtcgagcacaaggagcagctgaagaagctgcgggccaatgtcgacgtc
ctgacgatgtccgcgacccccatcccccgcaccctggagatggcggtcaccggcatccgg
gagatgtccactatcaccacgccccccgaggagcggcacccggtcctgaccttcgtcggc
ccgtacgagcagaagcagatcggcgcggcgatccggcgtgaactcctccgtgagggccag
gtcttctacatccacaaccgggtggagtccatcgaccgtgccgccgcgcggctgcgggag
atcgtccccgaggcgcgtatccagaccgcgcacggtcagatgggcgagtcccggctggag
caggtcgtcgtcgacttctgggagaagaagttcgacgtcctggtctccaccaccatcgtc
gaatccggtatcgacatctccaacgccaacaccctgatcgtcgagcgcggtgacaacttc
ggcctctcccagctccatcagctgcgcggccgggtcggccggggccgcgaccgcggctat
gcctacttcctctacccgcccgagaagccgctgaccgagaccgcgcacgagcgtctggcc
accatcgcccagcacacggagatgggcgccggcatgtatgtggcgatgaaggacctggag
atccgcggcgccggaaacctcctcggcggcgagcagtccggccatatcgccggtgtcggc
ttcgacctctatgtccgtatggtcggcgaggcggtggccgactaccgcgcctccctggag
ggcggtgtggaggaggagccgccgctcgaagtcaagatcgagcttccggtggacgcccac
gttccgcacgactacgcgcccggcgagcggctgcgcctccaggcgtaccgctccatcgcc
tccgcctcgacggagcaggacatcgccgccgtccgcgaggaactcaccgaccgctacggc
aagctgccggagccggtggagaacctgctgctggtcgccggactccggatgctggcgcgg
tcctgcggtgtcgcggacatcaccctgcagggctccaacgtccgcttcggccccgtggag
ttgcgcgagtcgcaagagctgcgcctcaagcggctctacccgcgcacggtcatcaagccg
gccacccagcaggtcctggtgccgcgccccaccaccggcaagatcggcggcaagccgctg
gtcggacgggaactgctggcgtgggtgggcgagttcctgacgacggtcctggggtcgtga
DBGET
integrated database retrieval system
