Streptomyces hawaiiensis: CEB94_16965
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Entry
CEB94_16965 CDS
T06917
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shaw
Streptomyces hawaiiensis
Pathway
shaw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEB94_16965 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shaw03400
]
CEB94_16965 (mfd)
Enzymes [BR:
shaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEB94_16965 (mfd)
DNA repair and recombination proteins [BR:
shaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEB94_16965 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCD56366
UniProt:
A0A6G5RF22
LinkDB
All DBs
Position
complement(3664154..3667687)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAIKAAEDGNRMHVDLVGPPAARPFAVAALARDTGRPVLAVTA
TGREAEDLAAALRSLLPAEGIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGQSTDLNEIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVADHGLWAPPCRELL
LTEDVRTRARALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDEDTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIAARLDSDLAEISPSVVHVACGSIEHGFVDAALRLAVLTETDLSGQKASG
REGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGESPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRFQSDTEAKA
TLEGLQEGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
IEEEQPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELVDRYGKL
PEPVENLLLVAGLRMFARACGVGEIVLQGSNIRFAPVELRESQELRVKRLYPGVVIKPTV
RQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggacgccgcgctcgcggaagcgatc
aaggcggccgaagacggcaaccgcatgcatgtcgacctggtcggcccccctgcggcccgc
cccttcgcggtcgccgccctggcccgtgacacaggccgcccggtgctggcggtcacggcg
accggccgtgaggcggaggacctggccgcggccctgcgctccctcctcccggccgagggg
atcgtggagtacccgtcctgggagacgctcccgcacgagcggctcagcccccgcagcgac
accgtgggccgccgcctggccgtgctgcgccgcctggcccacccccgccccgacgacccc
gagaccggcccggtctcggtcgtcgtcgcgcccgtccggtccgtgctccagccgcaggtc
aagggcctcggcgacctggagccggtttcgctgcggaccgggcagagcaccgacctcaac
gagatcgtcgaagccctcgccgcagccgcgtacgcgcgcgtggagctcgtcgagaagcgt
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggagcacccc
ctgcgcgtcgagttctggggtgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaagtcgccgatcacggcctgtgggcgccgccgtgccgcgagctgctg
ctcaccgaggacgtccgcacgcgcgcgcgtgccctggccgaacagcaccccgagctcggc
gaactgctcggcaagatcgccgagggcatcgccgtggagggtatggaatccctggctccg
gtcctcgtcgacgacatggagctgctgctcgacgtgctgcccaagggcgccatggccgtg
gtgtgcgacccggagcgggtgcgcacgcgcgcgtcggacctcgtggccacctcgcaggag
ttcctgcaggcctcctgggcggccaccgccggcggcggcgaggcacccatcgacgtcgga
gcggcctccctgtggtccatcgcggacgtccgggaccgggcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgcggacgaggagctcgacgaggacaccctcaagctc
ggcatgcacgccccggagacgtaccgcggggacaccgccaaggccctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgttcgtcaccgagggccacggcccggcggcc
cgtacggtcgaggtgctgggcggcgagggcatcgcggcccgcctcgactccgacctcgcc
gagatctccccgtccgtcgtgcacgtggcgtgcggctccatcgagcacggcttcgtcgac
gcggccctcagactcgccgtcctcaccgagacggacctgtcgggccagaaggcgtccggc
cgtgagggcgcccggatgccggcccgacgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggcgtgggccgttacatcgagatggtgcag
cgcacggtgcagggcgccacccgcgagtacctggtcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggtgagtcgcccacgctgcaccgcctcggcggcgccgactggaccaagacgaag
gcccgcgcgaagaaggccgtcaaggagatcgccgccgacctcatcaagctgtacagcgcg
cgcatggccgcccccgggcacgccttcggcgcggacaccccctggcagcgcgaactggag
gacgccttcccctacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtggccgtc
ctggtgcccacgaccctgctcgtgcagcagcacttcgggacgttcagtgagcggtacgcg
cagttccccgtgagcgtgaaggccctgtcccgcttccagagcgacaccgaggccaaggcg
accctggagggcctgcaggagggctcggtcgacatcgtcatcggcacgcaccggctgttc
tcgtccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgggccaacgtcgacgtgctgacgatg
tccgcgaccccgatccccaggacgctggagatggcggtcacgggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcgccacccggtgctcaccttcgtcggcccctacgag
gagaagcagatcggcgccgcgatccgccgtgagctgctgcgcgagggtcaggtcttctac
atccacaaccgcgtcgagtcgatcgaccgcgcggcagcccggctgcgcgagatcgtcccc
gaggcgcgcatcgccaccgcgcacggccagatgtcggagacggcactggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtgtccacgacgatcgtggagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctgtcg
cagctgcaccagctgcgcggccgggtgggccggggccgcgagcgcggctacgcctacttc
ctctacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgaccatcgcc
cagcacacggagatgggcgccggtatgtacgtggccatgaaggacctggagatccgcggc
gcgggcaacctcctcggcggcgaacagtccggccacatcgcgggcgtcggcttcgacctg
tacgtacggatggtcggtgaggccgtcgcggactaccggcgccagctggagaccggcggg
atcgaggaggagcagccgctcgaggtcaagatcgagctgcccgtagacgcgcatgtcccg
cacgactacgcgcccggcgagcgcctcaggctccaggcgtaccgcgccatcgcctccgcc
aactcggaggaggacatcaaggcggtccgcgaggagctcgtcgaccgctacggcaagctg
cccgaaccggtggagaacctgctgctcgtcgcgggcctgcgcatgttcgcgcgcgcgtgc
ggcgtcggtgagatcgtgctgcagggcagcaacatccggttcgccccggtggagttgcgc
gagtcccaggagctgcgggtcaagcggctgtaccccggggtcgtcatcaagccgacggtg
cgccaggtgctggtgccgcgccccaagaccgcgaaggtgggcgggaagccgctggtcggg
cgggagttgctggcatgggtcggggagttcctcacctctgtgctggggtcctga
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integrated database retrieval system
