Shewanella sp. MR-4: Shewmr4_0797
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Entry
Shewmr4_0797 CDS
T00388
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
she
Shewanella sp. MR-4
Pathway
she03410
Base excision repair
she03430
Mismatch repair
she03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shewmr4_0797
03430 Mismatch repair
Shewmr4_0797
03440 Homologous recombination
Shewmr4_0797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_0797
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Shewmr4_0797
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Shewmr4_0797
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shewmr4_0797
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
SIS_2
Motif
Other DBs
NCBI-ProteinID:
ABI37877
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All DBs
Position
931740..933464
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AA seq
574 aa
AA seq
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MIHKIVRRPTVDDSHLPAHLPPLLRQLYARRGVMPNECELVLKGLLRPDTMKGLEQAAKL
IADAMQQDKSILIVGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVA
VAASKQAELLITVDNGISSIEGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPGCQ
FASKSIAGVGVAFYLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDAN
NRILVEAGLQRVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCEDIMYARRMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQE
DWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLI
SKFGGHAMAAGLTLKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQ
LLRNAGPWGQSFEEPLFDGYFKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWP
DATIQHACIVYKLDVNEYRGNFTLQLMVEQIEPM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgatccataagatagtccgtcgtccaaccgttgatgatagccatttacccgctcacctt
ccgccgttattaagacagctttacgcccgccgtggtgttatgcccaacgaatgcgaactg
gtgctcaaaggcctgttaagacccgatacaatgaagggcttagaacaagcagctaagcta
attgccgatgcgatgcagcaggataagtcgatactgatcgtcggcgattttgatgccgac
ggtgctacctcgaccagtgtgtgtttgttagcgctgaggatgatgggcgcgagcaaggtc
gattatctgatccccaatcgtttcgactacggttatggtctgagtcctgagattgtcgcc
gtggcggcatccaaacaggcagaattacttattactgtagataacggcatttcctcaatt
gagggcgtggccgccgccaaagcctttggcatgcaggtggtgatcaccgaccatcactta
cccggccatgagttaccggcggccgatgccatagtgaatcccaatcagcccggttgtcag
tttgccagtaaatccattgctggcgtcggggtcgccttttatctgatgacggcgcttagg
gcagagctgcgcgctcgtcattggtatcaagcccgcggcattgctgagcctaatctcggt
actctgctggatattgttgcccttggcactgtggccgacgtggtgtcgctcgatgccaac
aatcgtattctggtcgaggcgggattgcagcgggtacgcagtggtcgatgccgtgtgggc
attaccgccttactcgaagtggccaaacgtaatcctgctcgcattgttgcctcggacttt
ggctttgccgtggggcctaggcttaatgccgctggcagactggatgaaatggcgcttggc
gttgaaaccctgctgtgcgaagacatcatgtatgcaaggcggatggcggcagaactcgat
agtctcaaccaagagcgacgtgagcttgaggtcgggatgcagcaagaggcgctgaaaagt
cttgaatatctaaagcttaatgaagagcaacttccgtggggtattgccctctttcaagag
gattggcaccaaggggttatcggtattcttgcttcgcggattaaagataaataccacaga
cccgttatcgcctttgccgatgcgggtaatggtgaaattaaaggctcggcgcgctccatc
aaaggcttgcatatgcgcgatctactggagttggttaactcgcgccatcctgggcttatc
agcaaatttggcggccatgcaatggcggcgggcttgactttaaagtccggtggcttcgca
acctttgctaaagcctatgatgatgcggtacgtgaactgttaaagcctgagcagctcacg
ggtgagctttggtccgatggtgaattaacaccgacggaacttaccctcgaaatcgcccag
ttactgcgtaatgccggaccttggggtcagtctttcgaggagccattattcgatggttat
tttaagattatccagcagcggatcgtgggggagcgccaccttaaattagtgcttgaaacc
ccatgcagtaccgtgatgttagacgcgattgcttttaatgtggatttacacacttggccc
gatgcgacgattcaacatgcgtgcatcgtctataagctggatgtgaacgaatatcgcggt
aatttcaccctgcagttgatggtcgagcaaatcgagccaatgtag
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