Shewanella sp. JNE2: MZ182_00790
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Entry
MZ182_00790 CDS
T08546
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MZ182_00790 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shej03021
]
MZ182_00790 (rpoC)
03400 DNA repair and recombination proteins [BR:
shej03400
]
MZ182_00790 (rpoC)
Enzymes [BR:
shej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MZ182_00790 (rpoC)
Transcription machinery [BR:
shej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MZ182_00790 (rpoC)
DNA repair and recombination proteins [BR:
shej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MZ182_00790 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UPO31426
UniProt:
A0A9Q8S4D7
LinkDB
All DBs
Position
176862..181079
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDDGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEAAVEAGDIIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTEFLEGEQVEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKVTASEAEQNLADLLNMAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtctgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtcacgcagactaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagtcgcgcacatttggttcttaaaatcactg
ccgtcccgtatcggtttaatgctggatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcattcgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaacgtatctggatgcgttagaagaatacggtgatgagttcgaagcgaaaatg
ggtgccgaagctgttctagaactgctgcgcgctatcgatttagcgaaagaaatcgaacaa
atgcgtgaagaattaccttcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagccttcttcacttcaggcaacaagcctgaatggatgatcttaaaa
gtactgcctgtgttaccgcctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgcaattaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttgggtaagcgcgttgactattctggtcgttcggtcattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaaaccattt
atctatggcaagctggaaggtcgtggcttagcgactaccatcaaagcggctaagaagatg
gttgagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtaatgcttaaccgtgcaccaacactgcacagattaggtattcaagcgttcgaacctgta
ctgattgaaggtaaagccatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgttatc
accccgtctcaagacgtggtattgggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagttcgtatcactgaaaccattattggtgatgat
ggtgagcgcactgaacaacgccgtatcgttgatacgactgtgggtcgtgctctgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacctgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatctctggtgcctctgtcggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagctgaa
gttcttgaaattcaagagcagttccaatctggtctagtcacagccggtgagcgttacaac
aaagttatcgatatctgggcaagtgccaacgaaaaagtttctaaagctatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcctcgtttaac
agcatctatatgatggctgactcaggcgctcgtggtagtgctgcacagatccgtcagttg
gcgggtatgcgtggtctgatggcgaaacctgacggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtctagccgataccgcattgaagacagcgaactcgggttacctgactcgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaaaccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgccgttgatgtgttctatccaggcaccgaagatgtactagcaccacgt
aacacgctgctcgacgaagcatggtgtgacaagttagaagagcattcaatcgatgaagtg
attgtgcgttctgtgattacctgtgataccgatttcggtgtctgtgcagcctgttatgga
cgtgacttggcccgtggtcatatcatcaaccatggtgaggccatcggtgttgtggcagca
caatctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcgtctgcagaaaacaatgtccaagtgaaaaactcgggttcattgaaactg
cataatgctaagcatgttactaacagcgacggcaaactggttatcgtttctcgttcttct
gagctggccatcatcgatgagttaggtcgtgagaaagagcgttacaaagtgccatacggt
actgtgcttgagaaattggaagaagctgcggttgaagcgggcgatattatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtcgatatg
attgacggtgtcactatgacacgtcaaacagacgaactaacgggtctatcatcaatcgtg
atccttgacgtcggtcagcgtggtacagcgggtaaagaaatgcgcccaatgatccgtctg
cttggcgctaatggtagcgatctgatgatccctggtacagaagtgccagcacagtacttc
ttacctggtagtgcgattgttaaccttgacgacaacgcgcaaattgccgtaggtgacgct
ttagcacgtattccacaggaatcgtctaaaacacgcgacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtaagccaaaagagcctgctattctggcagaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtcattacacctgct
gatggcggcgatcaatatgaagagatgatccctaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggcacatgacatt
ctgcgtctgcgcggtatccacaatgtagcaaactacattgtgaacgaagttcaagacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtcatcatccgtcaaatg
ctacgtaagtgcttgatcacttctgcgggtgacacagagttcttagaaggtgagcaagtt
gaagtgtctcgcgttaagatcgcaaaccgcgaacttatcgcacagggtaaagtacctgcg
accttcgaacgtgaactgctaggtattactaaagcgtctctggcaacagaatcgtttatc
tctgcagcgtcgttccaagaaactacgcgcgtactgactgaagccgccgtaggtggtaag
agtgatcaactacgtggtctgaaagaaaacgttatcgttggtcgtttgatcccagccggt
acaggttatgcttatcacaagacccgcaatgatgctcgcgctaagaaagacgagccagtt
gttgtgaataaagtcactgctagtgaagctgaacagaacctcgctgatctcttaaacatg
gccggtagccaagattaa
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integrated database retrieval system
