Shewanella sp. WE21: CKQ84_20865
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Entry
CKQ84_20865 CDS
T05404
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKQ84_20865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_20865
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKQ84_20865
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CKQ84_20865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AVI68085
UniProt:
A0A2R3F169
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All DBs
Position
4672821..4676306
Genome browser
AA seq
1161 aa
AA seq
DB search
MTHISALTPPAVKNGTQIQTLSTVGGVCQAVTLANLARQHKGTTLVVTSDTPSALSLELE
LSYLLSKTGIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLMI
RLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPTG
MNMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPKDTQLVTLGDIEKSARAH
LQEVEHRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQMQVPTDGIETTKAVVIA
ASTLPDISANHKLKQPLLALQDYASSAKRMLFSAESEGRREALLELLAKIQLKPALFNHF
DEFIQSDAKLGLIVSPLSRGCLLQISAKDSISIICETELFGHRISQQRRREKQRQISNDA
LIKNLAELKVGQPIVHLEHGVALYRGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSSLHLI
SRYSVGADEDAHLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARRQARPGESCAIDEEE
YAQFARGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAG
KQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQAQVLQQLEEGKVDIVIG
THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGI
IDLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERAD
TFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQD
LEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRIP
ALLPEAYVSDVNIRLSLYKRIAGCETQAALDELKVELIDRFGLLPEPTRNLMEMTLYKHE
ATRLGATKIEVHSKGGSIEFSDDHVIDPVFIIGLLQSQPQIYRMEGPNKLKFSLAAETSK
DRLALVKLLLEQLSQHRLGDK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgactcacatatcagccctaacgccgccagccgtcaaaaatggcactcaaattcagact
ctgtccaccgtgggcggcgtttgccaagccgttacactcgccaatttagcgcgtcaacat
aagggaacgaccttagtcgtcaccagtgacacgccaagcgccttaagcttagagttagaa
ctgagttatttgctcagtaaaacaggcattaaggtcagattattccctgaccgcgaaacc
ttgccctacgacagtttttcgccccatcaggatttaatttcccagcgactcgaaacgcta
tcgcagctgtctcagattgagcaaaatatcgttatcgtgcccgtcaccaccttgatgata
cgcctgccacctaaggcctatttaagcgccaacgtgtttgtgctcaaaaagggtgatagc
tacaagttacacgatgtacgccagcatttaaccgacactggctaccattcggtggagcaa
gtgtatgaacatggcgagtttgccattcgcggttcgattctggatatcttcccaacgggg
atgaatatgccactgcgcatcgagctattcgatgaagaagtggaaaccattcgccatttt
gatccagaaacccaacgctcattgcaacctgtcgactcgattcgcctattgcccgcgaag
gaattcccaaccgacagttcggccatcgaaggttttaggcaaagataccgccgccgtttc
gaggtcatagtcaaagagccggaatcggtttatcagctagtgagccgtaacttgatgccg
gcggggatcgaaaactacctgccgctattttttgatgacaccgccaccctattcgattac
ttgcccaaggacactcaactcgtcaccttaggcgatatcgaaaagtcggcgcgtgcgcat
ctgcaagaagtcgaacatcgctatcaagacagacgcgtcgatccactgcggccattactg
gcgcctaaagagctgtatttactcatagaagagttatttgccgcctttaaaccgctgcca
cgttatcaaatgcaagtgccaacagatggcattgaaacaacgaaagcggttgttattgcc
gccagcaccctgcccgacatcagcgccaatcataaattaaagcaaccactgctagcgctg
caagattatgccagcagcgccaaacgcatgttgtttagcgcggagtccgaggggcgccgc
gaagcgctgcttgaattgctcgctaaaattcagttaaaacctgcactgtttaaccatttt
gatgagtttattcaaagtgatgccaagttaggccttatcgtgtcgccgctgtcacgcggt
tgtttgctgcagatcagcgccaaagatagtatcagtatcatttgtgagactgaactcttc
ggccatcgaatttcccagcaacgccgccgtgagaaacagcgtcagatcagtaatgatgct
ctgattaaaaacttggccgaactcaaagttggccagcccatagtgcatttagaacacggc
gttgcactttataggggcttagtcaccctagatacgggtggattggtcgcagaatacttg
caattagaatacgctggcggtgacaaactgtatgtgccagtgtcttcattgcatctcatc
agccgttacagtgttggcgccgatgaagacgcccacttaaataaactcggcaatgagacg
tgggctaaagccaagaaaaaggcgattgaaaaaatccgcgacgtcgcggccgagctgctc
gatgtctatgcacgtcgccaagcacgtcctggcgaaagctgcgcaattgacgaagaagaa
tacgctcaattcgcccgtggcttccccttcgaagaaaccgtcgatcaagaaagcgccatc
atcgccgtgttagccgatatgcaatcgccgaccgcaatggacagattagtctgtggcgat
gtgggctttggtaaaaccgaagtagccatgcgcgccgcctttgtggccgtcaacgctggc
aaacaagtggtcgtgctagttccgaccacactgcttgcccagcaacactatgaaaacttt
aaagacagatttgccgactggcccgtggtcactgaagttatgtcacgctttcgtaccgcc
aaagaacaagcccaagtgctgcagcaattggaagaaggcaaagtcgatatcgtgatcggt
acccacaagttactgcaatctgaggccaagtttgaaaacttaggcctattgattatcgac
gaagaacacagatttggtgtgcgtcaaaaagagaaaatcaaagcgctgcgcgccaacgtg
gatatcttaaccctgaccgcgacgcctattccgcgcaccttaaacatggccatgtcgggt
atgcgcgatttatcaattatcgccaccccgcccgccaaacgtttagcagtgaaaaccttt
gtacgggaatcggatcccgcgactgtgcgcgaagccattttgcgggaaattctccgtggc
ggccaagtgtattacctgcacaataatgttgaaagtattgagaaatgtgcccaaggcatt
atcgatttattgcctgaagcgcgagtcgttgttgcccacggtcaaatgcgtgagcgcgat
ctagaacgggtaatgtcagacttttaccatcaaagattcaacgtgttagtctgtaccact
attatcgaaaccggtatcgacgtcccaagtgccaacaccattattattgagcgcgccgat
acctttggtctggcacagttacaccaattgcgtggccgcgtcgggcgctcgcaccatcag
gcctatgcctatttgatgacgccgcatcccaaacgtatgacaccagatgcgcgcaaacgt
ttagaagccattgatgctcttgaagatctcggtgcgggctttatgctggcgacccaagat
ttagagatccgcggcgcaggtgaactcttgggcgatgaacagagtggccatatttcgaaa
attggttttagcttgtacatggaaatgctcgaagcggcagtcaaagccttaaaacaaggc
aaagaaccgtcactggcgcaaatgctcaatcagcaatgcgaaattgaactgcgtatcccc
gccctactgcctgaagcctatgtgagcgacgtaaatattcgtctgtcgctctataaacgc
atcgcagggtgcgaaacacaggcggcgctggatgagttaaaagtcgaattgatcgaccgt
tttggcttattacctgaaccgacgcgtaacttaatggaaatgaccctctataaacatgag
gcgactcgcttaggtgcgactaaaatagaagtgcacagtaaaggtggcagcatcgaattt
agtgatgatcatgtcatagatcctgtgtttattattggattactccaaagccagccacaa
atctatcgaatggaaggaccgaataagttaaagttcagccttgcagccgaaaccagtaaa
gacaggctcgctttagtgaaactcttgctagaacaattatcgcaacatcgtcttggagat
aaatag
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