Shewanella sp. WE21: CKQ84_22570
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Entry
CKQ84_22570 CDS
T05404
Name
(GenBank) ATP-dependent helicase
KO
K19789
DNA repair protein RadD
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_22570
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
CKQ84_22570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
AAA_22
Helicase_C_2
AAA_16
DZR
zf-ribbon_3
AAA
zf-tcix
SLFN-g3_helicase
ERCC3_RAD25_C
UPF0547
SNF2-rel_dom
DUF3530
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AVI68396
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All DBs
Position
5035887..5037641
Genome browser
AA seq
584 aa
AA seq
DB search
MSVKLRDYQQQAVNAAIAHFRQSQASAVLVLPTGAGKSIVIAELARIAKGRVLVLTHVKE
LVAQNAEKVGLLTTEASIYAAGLNQKATDGKTVVASIQSAARGLTQFDQPFSLVIIDECH
RVSLEKTSQYQQVLNHLRTKNPQLRLLGLTATPYRLGTGWIYQQHYHGKVGSPEHAVFEH
CVFELPIRPLIKQGYLTAPTLFDGLSAQYDFSQLKANENGEYAEAEVNDLLGHYGRATTA
IVKQLIELSQHRKGIIIFAATVRHANEIFNILNQAHAAQSAIITAQTHDNERDATIERFK
AQELKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRIAEGKKDCLIIDYA
ANGYDLYFPEVGQVKPNSKSVPVQVHCPICDFANIFWGLTDDDGDIIEHFGRRCQGIVKQ
QGKKLQCDFRFRSKSCPDCGEENDIAARICQHCQSTLIDPDKRLRQVLSQQHHHLFRCQH
MSLIDDDGNLKVQYLDIDGNEFNRRFKLQTPAQWRALYALFIFPHSRTPGLKPKKYTKVT
ELISDADKFRMPDLLLLKKHKKGWDLLESYFDYQGRYQTENKRG
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagtcaaactcagagactatcaacaacaagcggttaatgccgccatcgcccatttt
aggcaaagccaagcttccgccgtactcgtattacccacaggcgcgggcaaaagcatagtg
atcgccgagctggcacgcatcgccaaaggcagagtattagtgctcacccatgtgaaagaa
ttagttgcacaaaatgcagagaaagtcggtttactgacaaccgaagccagtatttatgcg
gcgggactcaatcaaaaagccaccgacggaaaaaccgtcgttgccagtattcaatcggca
gcgcggggattaacgcagttcgatcagccgttctcgttagtcattattgatgaatgccac
agagtcagcctagaaaaaaccagccaatatcagcaagtactcaaccatttacgcacgaaa
aatccccaattaagattgctcggtctcaccgccaccccctatcgccttggcactggctgg
atttatcagcaacactatcacggcaaagtggggtctcccgaacatgccgtgttcgaacat
tgtgtgttcgagctgcccataaggccgctcattaaacaaggttacctcacagcgccaacc
ctgtttgatggcctaagtgcccagtacgacttcagccaacttaaagcaaacgagaatggc
gaatatgccgaagccgaggttaacgatttactgggacattacggccgcgcgaccactgcg
attgtgaaacaactcattgaactgagccaacatagaaaaggtattatcatttttgcggca
acggtacgtcacgccaatgagatttttaacatactcaaccaagctcacgctgcgcagagc
gccattatcacggcacaaacgcacgacaatgaacgtgacgcgacgattgaacgctttaaa
gcccaagagcttaagtttttagtcaacgtggctgtgttgacgacaggcttcgacgcgccc
catgtggatttgattgcaattttgcgccctaccgcgtcagtcagtctatttcaacaaatg
atcggccgtggattacgaatcgctgaaggcaaaaaagattgtcttatcatcgactatgct
gcaaatggttatgacttgtattttcccgaggtcggccaagtgaaacccaacagtaaatcg
gtacccgtgcaagtgcattgcccaatatgcgattttgccaatatattctggggactcaca
gacgacgatggcgacattatcgaacactttggtcgccgctgtcagggcatagtcaaacag
caaggtaaaaagctgcagtgcgactttcgatttagatctaaatcttgccctgattgcggc
gaagagaatgatatcgccgcgcgcatttgccagcactgccaatcaaccctcatcgatccc
gataaacgcctacgccaagtgctcagccagcagcaccatcatttattccgctgccagcat
atgagcctcatcgacgatgacggcaatctgaaagtgcagtacctcgatatcgacggtaat
gaattcaatcgccgctttaaattacaaacgccggcccagtggcgagccctatatgcctta
ttcatctttccccatagccgtacaccgggattaaaaccgaaaaaatacactaaggtgaca
gagttaatcagcgacgcggataaattccgcatgcccgatctcttgctgctgaagaaacat
aaaaaaggctgggatctgctcgaaagctattttgattatcaaggtcgctatcaaactgaa
aataaacgcggctga
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