Shewanella sp. FDAARGOS_354: CEQ32_03655
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Entry
CEQ32_03655 CDS
T04944
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEQ32_03655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_03655
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ32_03655
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEQ32_03655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASF14213
LinkDB
All DBs
Position
complement(801532..805026)
Genome browser
AA seq
1164 aa
AA seq
DB search
MTHISALTPPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHPGTTLIVTSDTPTALSLELE
LNYLLANTTIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQISHAEHSVVIVPVTTLMM
RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG
VNMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVATLFDYLPKDTQLVTLGDIEKSARAH
LHEVETRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDA
RALPEVSANHKLKQPLIALQDYAEQAPRILFSAESEGRREALLELLGKIQLKPTVFSHFD
EFIKTDTKLGLIVSPLSRGCVLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTL
IKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLIS
RYSVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEY
AQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAGK
QVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGT
HKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDIS
TLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADT
FGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDL
EIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPA
LLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPEATKNLMEMTLYKHQA
TRLGATKIEVHAKGGSIEFSQDHNIDPSFIIGLLQSQPQIYRMDGPNKLKFMLSAETAKE
RLALVKLLLEQLSQHQSQHRLGDK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgacacatatttcagccctaacaccgcccgttgtaaaaaatggcactcaaatgcaaact
ctgtcgtgtatcgccggagtgggtcaagcggtcaccctcgccagcttgatacgccaacac
ccaggcaccacgctcattgtcaccagtgacacaccaacggcattgagtctcgagttagag
cttaattatttattagcgaacaccaccattaaggtgcggctatttcctgaccgtgaaacc
ctgccctacgacagtttttcaccccatcaggatttgatctcccagcgtttagaaacccta
tcgcaaatatcccatgctgagcacagcgtggttatcgtgccagtgacaacactgatgatg
cgcttgccgccgaaatcctatttaagctccaatgtatttgtgcttaaaaagggcgataaa
tatcagctccatgatgtgcgccagcaattaaccgatacgggctatcatttagttgagcaa
gtttacgaacatggcgagtttgccattcggggctcaattctcgatatcttccctaccggc
gtgaatatgccgctgcgtatcgagcttttcgatgatgaagttgaaactattcgccatttc
gacccagagacccagcgctcatccacacccgtcgatgcggtgcgattattaccggcaaaa
gaatttccaaccgatagcagtgctatcgaaggctttagacaacgctatcgccgccgtttt
gaggtgatcgttaaagagccagagtcggtttatcaattggtgagccgaaatttgatgccc
gctgggattgaaaactatctgccactgtttttcgatgaggtcgcgacgctatttgattac
ctgccgaaggacactcagttagtcaccttgggcgatatcgaaaaatccgctcgcgcccat
ttgcatgaagtggaaacacggtatgaagaccgacgggtcgatccgctacgaccactgctt
gcccctaaagaactgtatttactgatagaagaattatttgccgcctttaagccgctacct
cgctatcaatttgtggccccaaatcctgacaccaatggtgttgcggcgcaaattgatgcc
agagccttgcctgaggtaagcgccaatcacaaattaaagcagccgttaatcgcactgcag
gattatgctgagcaggcgccgcgcatattatttagcgcagaatctgaaggtcgccgtgaa
gcgctgctcgaactcttaggtaaaatccagttaaagcctacggtatttagtcattttgat
gagtttattaaaactgataccaaacttggcttgatcgtttcgcccttatcccgtggttgt
gtactgggactcggcgcacaaactgccgtcagcatcatctgcgaaactgagctcttcggc
cagcggatttcacagcagcgtcgccgcgaaaaacagcgtcagatcagtaacgatacctta
atcaaaaatttagccgagctgaaagttggccagccgatcgtacacttagagcacggtgtt
gccctttaccaaggtttagtcaccctcgatactggcggcattgttgctgaatatttgcaa
cttgagtactcaggtggcgataagctctatgtccccgtttccaatttacatttaattagc
cgttatagtgttggcgccgatggggaaacgcatcttaataaactgggtaacgacacttgg
gctaaggcgaaaaataaagccattgaaaaaatccgcgatgtggccgcagaacttctcgat
gtctatgcacgtcgccaagctcgtccgggtgagagctgcgaaatcaatgacgaagaatac
gcccaattcgctcaaggtttcccctttgaagaaaccgtcgatcaagaaagtgcaatacat
gccgtgctcgccgatatgcaatcgccaaccgcaatggacagattagtttgtggtgatgtg
ggctttgggaaaaccgaagtcgcgatgcgcgccgcctttgtggcggtgaatgcgggtaaa
caagtggttgtgttggtacccaccacgttactcgcccagcagcactacgaaaactttaag
gacagatttgccgactggccggtggtgattgaagtgatgtcacgctttagaaccgccaaa
gagcagacccaagtgctaaaacagctcgaagaaggcaaagtcgatatcgtgattggcacc
cataagctgctgcaatccgaggctaaatttgagaatttaggcctacttatcatcgacgaa
gaacacagattcggtgtcagacaaaaagagaaaattaaagcactgcgggccaatgtggat
attttgaccctcaccgccacaccgatcccccgcaccttaaatatggcgatgtcgggaatg
cgcgacttatcgattattgccacacctcccgctaagcgtttggcggtgaagacctttgtg
cgcgaatccgatcccgcgacggtgcgcgaggctatattgcgtgaaatcctccgtggtggc
caagtctattacctgcacaataatgtcgaaaccattgaaaaatgtgcccaagacattagt
accttgttacccgaagcgcgggttgtggtcgcccatggccaaatgcgtgagcgggatctt
gagcgggtgatgtcggacttttatcaccaaagattcaacgtgttagtctgtaccactatt
atcgaaaccggtatcgacgttcccagtgcaaacaccattattatcgaacgcgccgacacc
tttggtttagcccagttgcatcagctacgtggccgtgtgggtcgctctcaccatcaagcc
tatgcgtatttgatgacgccacatcctaaacgtatgactagcgatgctcgcaaacgtctc
gaagccatcgatgcccttgaggatttaggcgccggttttatgctcgccacccaagattta
gagatacgcggcgcaggcgaactcttaggtgatgagcaaagcggccatatctcaaaaatt
ggctttagcctctatatggaaatgcttgaatcggcggtcaaagcgcttaagcaaggtaaa
gagccatcgctggcgcaaatgctcaatcagcaatgtgaaatggaactcagaattccggcc
ctattacctgaagactatgtcggtgatgtgaatattcgtctgtcgctctacaagcgtatc
gccagttgtgacagcgaagaagccttagacgaacttaaagttgagcttatcgaccgcttt
ggtttgctgccagaggccactaaaaacttgatggaaatgactctgtataaacatcaggca
actcggctaggggcgactaaaattgaggtacacgccaagggtggcagtatcgaatttagc
caagatcataatatcgacccaagctttatcattggattactgcaaagtcagccacaaatc
tatcgaatggacgggccgaataagttaaagttcatgctcagcgccgaaacggcaaaagag
aggctcgcgttagtcaagctcttgctcgaacaactatctcaacatcaatcgcaacatcgt
cttggagataaatag
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