Sphingobacterium sp. 21: Sph21_2954
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Entry
Sph21_2954 CDS
T01450
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
shg
Sphingobacterium sp. 21
Pathway
shg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sph21_2954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shg03021
]
Sph21_2954
Transcription machinery [BR:
shg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sph21_2954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
GerE
Sigma70_r2
Sigma70_r4
HTH_5
Sigma70_ECF
HTH_Tnp_ISL3
HTH_10
HTH_23
HTH_24
NUMOD1
HTH_40
Phage_CI_repr
HTH_38
HTH_17
HTH_36
TFIIB
HTH_AsnC-type
Fe_dep_repress
HTH_Crp_2
HrcA_DNA-bdg
Motif
Other DBs
NCBI-ProteinID:
ADZ79500
UniProt:
F4C3P0
LinkDB
All DBs
Position
3684969..3685553
Genome browser
AA seq
194 aa
AA seq
DB search
MKDLTKFSDEELFHACVDGSELSFEELYNRYWYKLYAEALRRLRKAELAEEIVQDLFTSI
WLNRKRIQIHSSVAAYLFTSVRYLVISAIQKEIVRKNYKEFYKGNFRDYDNSTETRLAFN
ELQNQIENHVRLLPDRCRYIYELSRKEFKSNKEIADLLGISEKTVENQLTKALSRLKVAM
KLYSFHLLLLYYLC
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttaacaaagttttctgatgaagaacttttccatgcctgtgtagacgggagc
gaattatcctttgaagagctatacaatcgttattggtataaattatatgccgaggcgctg
agacgattaagaaaggctgagttagcagaggaaattgtacaggatctgttcactagtata
tggctgaaccgcaaacgaatacagattcatagttccgttgctgcttatctttttacatct
gttaggtacttggtaataagtgctatacaaaaggaaatagttagaaagaattacaaagaa
ttctacaaaggcaattttagggattacgataattctaccgaaacacggctagcctttaac
gagttacaaaatcaaattgaaaaccatgttcgattactacccgaccgctgtcgttatatt
tatgagctaagcagaaaagagtttaaaagtaataaggaaatagctgatttgcttggcata
tcggaaaaaacggttgaaaaccagttgaccaaagcattaagtaggctgaaagtagcgatg
aagctttattcttttcatcttttattgctgtattatttatgttag
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