Slackia heliotrinireducens: Shel_09420
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Entry
Shel_09420 CDS
T00981
Name
(GenBank) RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
shi
Slackia heliotrinireducens
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shel_09420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shi03021
]
Shel_09420
Transcription machinery [BR:
shi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shel_09420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_AsnC-type
Exonuc_VII_L
KORA
ATP_bind_2
Motif
Other DBs
NCBI-ProteinID:
ACV21983
UniProt:
C7N4Z8
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Position
1088310..1089494
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AA seq
394 aa
AA seq
DB search
MSAAKATKIDDIDIEEPQVEDDVMTEDDIASAEDKDDTAIEDEDLLEGIPEEELKAPSAA
AATLPKIKNNRSSRSRVRRSADTSVTMLTGDPVRMYLKEIGKVPLLTPSEEVDLAMKIEA
GVAATAELEKAEEEGVELDRRERRRLTRVEQVGLDAKDQLIEANLRLVVSIAKRYVGRGM
LFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVET
INKLVRIQRQLLQELGRDPSPEEIGEKMGLSAERVREIQKLSQEPVSLETPIGEEEDSQL
GDFIEDDSAIVPVDAASFAMMQEQLSKVLDTLGERERNVVIKRFGLEDGQPHTLEEVGRE
FGVTRERIRQIESKTLAKLRHPSRSSKLKDYLED
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgcagccaaagctacgaaaatcgatgatattgatattgaagagccccaggttgaa
gacgatgtcatgacggaggatgacatcgcaagcgcagaagacaaagacgataccgccatc
gaagacgaagacttgctcgagggaattcctgaagaggagctgaaggctccttcggccgct
gcggcaacactccccaagatcaagaacaaccgctcttcgcgttcgcgcgttcgtcgttcc
gcggacacgtcggtgaccatgcttaccggcgaccctgttcgcatgtacctcaaagaaatc
ggcaaagtcccgctgcttaccccttcggaggaagtcgacttggccatgaagatcgaggcc
ggcgtcgccgctactgccgaactggagaaggcggaagaggagggcgtcgagctcgaccgt
cgtgagcgccgtcgcctgacccgcgtggagcaggtcggtcttgacgcgaaagaccagctt
atcgaagcgaacctgcgtctcgtggtctccatcgccaagcgttatgtcggtcgtggcatg
ctgttcctggacctcatccaggaaggcaacctcggcctgattcgtgcggtcgagaaattc
gactacaccaagggcttcaaattctccacgtacgccacgtggtggattcgtcaggccatc
acccgcgccatcgccgaccaggcgcgtaccatccgcattccggtgcacatggtcgagacc
atcaacaagcttgtccgcatccagcgccagctgctgcaggagctgggccgcgatcccagc
cccgaggagatcggcgagaagatgggcctgtctgcagagcgtgtgcgcgagatccagaag
ctgagccaggagcccgtgtccctcgaaacgcccatcggcgaagaggaggattcccagctc
ggcgacttcatcgaggatgactccgccatcgttcccgtggacgcggccagcttcgctatg
atgcaggagcagctttccaaggtgctcgacaccctgggcgagcgcgagcgcaacgtggtc
atcaagcgcttcggcctggaagacggccagcctcacacgttggaggaggtcggacgggag
ttcggcgtcactcgcgagcgtatccgccaaatcgagagcaagaccttggcgaaattgcgt
catcccagtcgttcttccaagttgaaggactatttggaagactag
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