Slackia heliotrinireducens: Shel_21910
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Entry
Shel_21910 CDS
T00981
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shi
Slackia heliotrinireducens
Pathway
shi03410
Base excision repair
shi03430
Mismatch repair
shi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shel_21910
03430 Mismatch repair
Shel_21910
03440 Homologous recombination
Shel_21910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shi03400
]
Shel_21910
DNA repair and recombination proteins [BR:
shi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Shel_21910
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Shel_21910
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shel_21910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
Helicase_C
DEAD
DHH
DHHA1
ResIII
SecA_DEAD
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACV23201
UniProt:
C7N0X9
LinkDB
All DBs
Position
complement(2427463..2430771)
Genome browser
AA seq
1102 aa
AA seq
DB search
MTAQFEIRGAEPSAVAAIQQEFGLPRFVAATMVAHGVKTLEEARHFLNPDLDEDWRNPYD
IPQMKEAADRVEAAIRNNETILVFGDFDLDGISATTVLTRGLRSLGADAHWLIPRRFEEG
YGLSDAAIARAQTECDPDLIITVDCGISCKDEAETVKSLGMELVVTDHHEPSENVPEGII
VVDPKCCEDNPSSILAGVGVALKLVQVLGARFGEPYLWRQYTDLATLGTVADLMPLRDEN
RALVADGLRQINTNPRPCIAALIGVCNVADKELTSTNLSFSLIPRLNAAGRMGDAGLAAK
LLMEDDFGEAQKLAAELDAVNDQRRSIEADLAAVAKEQAEKIYDGQRALVVAGEGWHEGV
KGIVASRLVNTYGVPSILFTITGDEARGSGRSVGQVNLFKAVESLSDMLVRFGGHAAAVG
VTVPTDRLPEFNERLCAYMDSLPESSFHPLITIDTPVDLDELTIENVEQLERLAPFGQEN
PTPRLLARNVRIVNARAVGAAKNHLSCSLTDGVSRVDGIMFHCEGIEGLMACGGVVDAVF
EVEIDEWRGRRKVKCMLKAVEPTATCPALSACLPSDDLEFIGEMYDEWDGGQDDDDDGFD
PLSPEAKQLWITEATGDGSTLEDAIIASLIGDASKLHAAQRAALQSLDAKKNTLVVMGTG
RGKSLIFQTKAAHLALNEHAASLFVYPLRALIDDQWYLMKELFEPFGLEVASLTGETSAD
ERQRVYRGLADGTIDVVLTTPEYAVYHIDDIAASGRIKLMVVDEAHHMAEMGTRKRAAYG
AMGTLAEKLGNPTVLALTATGPTKVANITDSILGIEQHVLDDTIRPNLQMDDRRNLRDKD
SYLAGIVATGEKTIIYVNSRMGTVDLARTLRTMVPQVAMQIGFYNAGMSRDERERIGQLF
RDDVLKVLVCTSAFGEGVNIPDVRHVVLYGMPFSEIEFNQMSGRAGRDGTEATIHLLFGR
RDAEVCERILRTAAPSHDDMAQIYRTLRHMQSERPDDAFFPMDDVELASACGRSTITPES
CAAGIAVFSELGLVEVREASEDAPRQIRVPNAKSRVELTDSVYYREGIEELDAFTRFKDW
ALRSTADMLRSHMITPILPHGE
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgcaattcgagattcgcggagccgagccctccgcagttgctgctattcaacaa
gagttcgggctgccgcgtttcgtggcggccaccatggtcgcgcatggcgtcaaaacgctg
gaggaggcccggcacttcctcaaccctgatttggatgaggactggcggaacccctacgac
atcccccagatgaaagaagcggcagaccgcgtggaggcagccatccgcaacaacgagacc
atcctcgtgttcggcgatttcgacctcgacggcatctcggcgaccacggtgctgacccgc
ggcctgcgttcgctgggggccgacgcccattggcttataccccgccgcttcgaggagggc
tacggcctgtccgacgccgccatcgcccgtgcgcagacggaatgcgatcccgacctcatc
atcacagtggactgcggcatctcctgcaaggacgaggccgaaacggtgaagtccctgggt
atggagctggtggtgaccgaccatcacgaacccagcgagaacgttcccgaaggcatcatc
gtcgtcgacccgaagtgctgcgaggataatcccagcagcatcctggccggcgtcggcgtg
gcgctcaagctggtccaggtcctgggcgcccgcttcggtgagccgtacctgtggcgccaa
tacaccgatctggcaacactgggtaccgtggccgacctcatgccgctgagggatgagaac
cgcgccctggtggccgacggcctgaggcagatcaataccaacccgcgcccctgcatcgcg
gcgctcatcggcgtatgcaacgtggcggacaaggagctcacgtccaccaacctgtccttc
tccctcattccacggttgaacgcggccggacgcatgggggatgccggtttggcggcgaaa
ctcctgatggaagacgatttcggcgaagcccagaagctcgcggccgaactggacgccgtc
aacgaccagcgtcgctccatcgaggcggacctggccgccgtggcaaaggagcaggccgag
aagatctacgacgggcagcgcgcgctggtggtcgcaggcgaaggttggcatgagggcgtg
aagggtatcgtcgcatcgcgcctggtcaatacctatggcgttccgtctattctcttcacc
atcaccggcgacgaggcgcgcggcagcggccgcagcgtcggccaggtgaacctgttcaag
gccgtcgagtcgctgtctgacatgctcgtccgcttcggagggcatgctgctgcggtgggc
gtgaccgttcccaccgacaggctcccagaattcaacgagcgcctgtgcgcctacatggat
tcgctgccggaaagcagcttccatcccctgatcaccatcgacacgccggtcgatttggac
gagctcaccatcgagaacgtggaacagctcgagcggcttgcccccttcgggcaggagaac
ccgacgcccaggcttttggcccgcaacgtgcgcatcgtcaacgcccgggccgtgggcgcg
gcgaaaaaccatctgtcctgctcgttgacggacggcgtttcccgcgtggacggcatcatg
ttccactgcgaaggcatcgaggggctcatggcctgcggcggcgtggtcgacgccgtgttc
gaggtggaaatagacgaatggcgtggccgccgcaaggtgaagtgcatgctcaaggccgtc
gagccaacggcgacgtgcccggccctgtccgcctgcctgccctccgacgaccttgagttc
atcggcgagatgtatgatgaatgggacggcggccaagacgatgacgacgacgggttcgat
ccgctgtcgcccgaggccaaacagctctggatcaccgaagccaccggcgatggcagcacg
ttggaggatgccatcatcgcgtcgctcatcggcgacgcgagcaagctgcatgccgctcag
cgtgcggcgctgcagtcgctggacgccaaaaagaacaccttggtcgtcatgggtacgggc
cggggcaagtccctcatcttccagacgaaggcggcgcacctcgctttgaacgagcatgcg
gccagcctgttcgtgtacccgctgcgcgccctgatcgacgaccagtggtacctgatgaag
gagctgttcgaacccttcgggctggaggtggcctcgcttacgggcgaaacctccgccgac
gagcgccagcgcgtgtaccgaggtctggccgacggcaccatcgacgtggttctgaccaca
cccgaatacgccgtctaccacatcgatgacatcgccgccagcggccgcatcaagctgatg
gtggtggacgaggcccaccacatggccgaaatgggaacccgtaagcgcgcggcatacggc
gccatgggcacgctggccgaaaagctcggcaacccgacggtgctggcgcttaccgccacg
ggccccacgaaggttgccaacataaccgacagcatccttggcatcgagcagcacgtgctg
gacgacaccatccggcccaacctgcagatggacgaccgccgcaacctgcgcgacaaggac
agctatctggcgggtatcgtcgcgaccggcgagaaaaccatcatctacgtcaactcccgc
atggggacggtggatctggcccgtacgctgcggaccatggttccccaggtcgccatgcag
atcggcttctacaacgccggcatgtcccgcgacgagcgcgaacgcatcggacagctcttc
cgcgacgacgtgctcaaagtgctcgtgtgcacgtcggccttcggcgaaggcgtcaacatc
cccgacgtgcgccacgtggtgctgtacggaatgcccttctcggaaatcgagttcaaccag
atgagcggccgcgccggccgcgacggcaccgaagccaccatccatctgctgttcggtcgc
cgcgatgcggaggtgtgcgaacgcatcctgcggaccgccgcaccgtcccacgacgacatg
gcccagatctaccgaacgcttcggcacatgcagtcggaacggcccgatgatgcgttcttc
cccatggacgacgtggagctcgcctcggcctgcggacgctccaccatcactcccgaatcc
tgcgccgccggcatcgccgttttctcagagctcggcctggtcgaggtccgcgaggcgtcg
gaggatgctcctcgccagattcgcgttccgaacgccaaaagcagggtggaattgaccgat
agtgtatattatcgtgaagggattgaagaactagacgcttttacgcggttcaaggactgg
gcccttcgtagtacagccgatatgttgcgttcgcatatgatcacgcccatcctgccgcat
ggtgaataa
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