Shewanella sp. ANA-3: Shewana3_2289
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Entry
Shewana3_2289 CDS
T00428
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shewana3_2289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_2289
Enzymes [BR:
shn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shewana3_2289
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Shewana3_2289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABK48518
UniProt:
A0KXJ9
LinkDB
All DBs
Position
2750925..2754407
Genome browser
AA seq
1160 aa
AA seq
DB search
MTQISALTPPVVKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELE
LNYLLAKSVIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPVTTLMM
RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG
VNMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVATLFDYLPKDTQLVTLGDIEKSARAH
LQEVETRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFIAPQPDAVAGAVQIDA
SVLPEVSANHKLKQPLIALQDYAERAPRMLFSAESEGRREALLELLSKIQLKPVLFSHFD
EFIQSDAKLGLIVSPLSRGCLLGLGKQTAVSIICETELFGHRISQQRRREKQRQISNDTL
IKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYSGGDKLYVPVSNLHMIS
RYSVGADGEAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCDINDEEY
AQFAQGFPFEETVDQESAIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGK
QVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKLLEEGKVDIVIGT
HKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDIS
TLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADT
FGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDL
EIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPA
LLPEDYVGDVNIRLSLYKRIASCDSEETLDELKVELIDRFGLLPEATKNLMEMTLYKHQA
TRLGATKIEVHAKGGSIEFSDDHVIDPGFIIGLLQSQPQIYRMDGPNKLKFILNAETAKD
RLALVKLLLEQLSQHRLGDK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaatttcagccctaacaccgcccgttgtcaaaaatggaactcaaatgcaaacc
ctgtcgtgtctcgccggggttggtcaagctgttaccctcgccagcctagttcgtcaacac
aagggcacgacattgattgtgaccagtgatacgccgacggcattgagtatcgagttagag
ctcaactatttgttggctaaaagtgtgattaaggtgcgactgttccctgaccgtgaaact
ctgccctacgacagtttttcgccccatcaggatttgatttcccagcgtttagaaaccctg
tcgcaaatcacccaagccgagcacagcgtagtgattgtgccggtgacaacgctgatgatg
cgcctaccgccaaaatcctatttaagctccaatgtgtttgtgcttaaaaaaggcgataaa
tatcagctccatgatgtgcgccaacagttaaccgacacgggttatcacttggtcgaacag
gtttacgaacatggcgagtttgccattcgtggctcgattctcgatatcttccccaccggc
gtgaatatgccgctgcgtatcgaactgttcgatgatgaagtcgagaccattcgccatttc
gatcctgaaacccagcgctcgtccactccagtcgatgcggtgcgcctgttacccgccaag
gaattccccaccgacagcagcgccatcgaaggttttaggcaacgttatcgccgacgcttt
gaggtcatagtcaaagagcctgaatcagtttatcaactggtgagccgcaatttgatgccc
gcaggtattgagaactatttgccactgtttttcgatgaggtcgcgacactgttcgattac
ctgccgaaggacactcaattagtcaccctaggcgatatcgaaaagtccgcccgcgctcat
ttgcaagaggtggaaacccgttatgaggacagacgggtcgacccattgcgaccactgttg
gcacccaaagagctgtatttactgatagaagaattatttgccgcctttaagccactgcct
cgctatcagtttattgcgccgcaacccgatgccgtcgctggcgcagtacagattgatgcc
agtgtgttgcccgaagtaagcgctaatcacaagttaaagcagccactgattgcgctgcaa
gattacgccgagcgtgcgccgcggatgttgtttagtgccgaatcggaaggccgccgcgaa
gctttactcgaactcttaagtaaaattcagttaaaaccggtgttattcagccatttcgat
gagtttattcaaagtgatgccaaactgggtttaattgtatctcccctctcccgtggttgt
ttactcgggctaggaaagcaaaccgccgtcagcatcatctgcgaaaccgaactctttggt
catcgcatttcccagcagcgccgccgtgaaaaacagcgccagatcagcaacgatactctg
atcaaaaacttagccgagctcaaagtcggccagccgattgtgcacttagagcacggtgtg
gcgctgtatcaaggcctagtcaccttagataccggcggattagtggccgaatacctacag
ctggaatactcgggcggcgataaactctatgtgcccgtgtctaacctgcacatgatcagc
cgctacagcgtcggcgccgatggcgaggctcacctcaataaactcggtaacgacacttgg
gccaaggcaaagaacaaagcgattgagaaaatccgcgatgtggcagccgagctgctcgat
gtctacgcccgccgtcaagcacgccccggcgaaagctgcgacatcaacgatgaagagtat
gcgcaatttgcccaaggtttcccctttgaagaaaccgtcgatcaggaaagcgcaattcat
gccgtgcttgccgatatgcaatcccccgtcgccatggaccgcctcgtctgcggtgatgtg
ggctttggtaagactgaagtcgcgatgcgcgccgcctttgtggcggtgaatgcgggtaaa
caagtcgttgtgctagtgcccaccacgctactcgcccagcagcactacgaaaactttaag
gacagatttgccgactggccggtagtgattgaggtgatgtcccgctttagaaccgccaaa
gagcaaacccaagtgctgaaactactcgaagaaggcaaagtcgatatagtgattggcacc
cataagctgctgcaatccgaggcaaagtttgaaaacttaggcctgctaatcatcgatgaa
gaacatcgattcggcgtaagacaaaaagagaaaatcaaggcgctgcgcgccaacgtagat
attttgaccctcaccgccactccgatcccccgcaccttaaacatggcgatgtcggggatg
cgcgacttatcgattattgcgactcctcccgctaagcgcttggcggtgaagacctttgtg
cgcgaatccgatcccgccaccgtgcgtgaggccatactgcgtgaaattctccgtggtggc
caagtgtattatttgcacaacaatgtcgaaaccattgagaaatgcgcccaagatattagt
accctgctacccgaagcgcgggtggttgtggcccatggccaaatgcgtgaacgggatctt
gagcgggtgatgtcggacttttatcaccaaagattcaacgtgttagtctgtaccactatt
atcgaaaccggtatcgacgtccctagtgcgaatacgattattatcgaacgtgctgacacc
ttcggcttagcccagttgcaccaactgcgtggccgcgtcggacgctctcaccatcaagcc
tatgcgtatttgatgacgccgcatcctaaacgcatgaccagtgatgcccgcaaacgtctc
gaagccatcgatgccctcgaagatttaggcgcaggctttatgctcgcgacccaagactta
gaaattcgcggcgcgggcgagctcttgggcgatgagcagagcggtcatatttctaaaatt
ggctttagtctctacatggaaatgttggagtcggcggttaaggcgctcaaacagggtaaa
gagccatcgctggcgcaaatgctcaatcagcaatgcgagatggagctaagaattcctgcg
ctattgccggaagactatgtcggtgatgtgaatattcgcctgtcactctataagcgcatc
gccagttgtgacagtgaagaaaccttagatgaactcaaggttgagcttatcgaccgcttc
ggtctgctgcccgaggccaccaaaaacctgatggaaatgactttatataaacatcaggca
actcggctgggcgcgactaaaattgaggtacatgctaagggcggcagcatcgaatttagt
gatgatcatgtgattgatccgggctttatcatcggattactgcaaagtcagccacaaatc
tatcgaatggatgggccgaataagttaaagttcatcctcaatgccgaaacggcaaaagat
aggctcgctttggtcaaactcttgctcgaacaactatcgcaacatcgtcttggagataaa
tag
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