Shewanella alkalitolerans: K0J45_10910
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Entry
K0J45_10910 CDS
T09228
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shns
Shewanella alkalitolerans
Pathway
shns03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0J45_10910 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shns03400
]
K0J45_10910 (recB)
Enzymes [BR:
shns01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0J45_10910 (recB)
DNA repair and recombination proteins [BR:
shns03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0J45_10910 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYJ96078
LinkDB
All DBs
Position
2440891..2444562
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AA seq
1223 aa
AA seq
DB search
MATQTLNPLSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTN
AATQELRDRIRKKIQLAYRAFLGMEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDEA
AIFTIHGFCQRILSDMAFESSLLFESEFTLDDSQYLHHAVRDFWREACYPLPGYLAQIIS
NKFSDPDGLTKQLRPLLGANQASVSPTPEAFSQVAERLSQSLSRLRLIWPRERDATLELL
KALPLNGTRFGKKDQGYPKLETLFAAMDNWAAQPLSLPDNKVLGALALGGLKLNKGGEIP
TPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKRRFAAQKQLKNLRTPDDLLIALADAL
SEETDQEQALAKAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVSTDSDLGLLMIGDP
KQAIYAFRGADIHTYIHARGQTENHYSLDTNYRSSQAMVEAVNQLFSRSVDPFISQAIPF
EFIKPSPMAAEKRLVEKVPQTSALRLKLLGEDPNAGLNKASARSQLAEDAANEITRLLNE
AQRGECLKQDKPLKAKDIAVLVRDRNEAAYIKSALSSRGIGAVFLSRDSVFDTLVAKELA
LVLLAIANPKDERALRSAMATALLGYDAQAIHGFNLDEDVRQQQLEAFDNLHQTWLKRGI
MPCMMALAADTRLIERLLTADEGQRRLTDFRHLGELLQQKAMELDGISALLNWYQQTLIE
VSSTEEAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLARDNRRKPAPMLYHEQDAL
VWDIDQSDEGWAKYKAENLAEDLRLLYVALTRPVLACYCYVANHSRFTKRDGISSQLFET
AIGYLLGIETKACEFADIQAAAQALASEAISVDLVDGDAPKLDFDPIDTADAVKLAPRPL
SRRREIPWRVGSYSGLVKHSAHEQVSPGMGDEAFPELEQLAPDSEQLSRFSFERGANAGS
FLHWVLEQIDFTQADTSLGDELPKAMERFGIDSEWQEMLHAWYLDLLHVPLDGDALRLAS
LSHAQKLVEMEFYMPIGKLDAPGLNQLLSQYGYSAALSFETLEGMLKGFIDLTFEYQGKF
YIADYKSNHLGDHLSHYEKPAMQRAIAGHHYDLQYIIYSLALHRYLKLRLPGYQYDQHVG
GCYYLFLRGMSANSPSTGVYYDKPPLGLIQALDTLLSYAEASESQADSQAESQAESQAES
QPHSPTDRQSDMPSGPAQGELDL
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacagacactaaatcccctaagcctgccgctctcgggcactcgcctcatcgag
gccagcgcaggtaccggcaagacctacaccatcgccggactctatgtgcgcttattattg
ggcgatagccagcgcgcgccgctaagctgcgagcagatcctggtggtgacctttaccaac
gccgccactcaggagcttagggatcgtatccgcaagaagatccagctggcctaccgcgcc
tttctcggcatggaggtggacgatcccctgatcaacacactctattctgaggccgagccc
gaggcgcgcagtcaggcgctgaagcgcctggatctcgcgctcaagtcgctggatgaggcg
gcgatttttaccatacatggtttctgtcagcgcatcctgtcggatatggcgttcgagtca
tccctgctgtttgagtccgaatttaccctggatgacagccagtacctacaccatgcggtg
cgcgacttctggcgagaggcctgctatccgctgcccggctatctggcacagatcatcagc
aacaagtttagcgatcccgacggcctgaccaagcagctaaggccgctactcggcgccaat
caggccagtgtttcgccaacacccgaagccttcagtcaggtggcggagcgcctgagccag
agcctttcgaggctgaggcttatctggccgcgcgagcgcgatgccacccttgagctactc
aaggcgctgccgctaaacggcacccgctttggcaagaaagatcagggctatcccaagctt
gagacactattcgccgccatggataactgggcggctcagccgctctccctgcccgacaac
aaggtgctgggggccctggccttaggcggcctcaagctcaacaagggcggcgagatccca
acgccggagcaggcgccgctacttgcccatatagagcgtgtcacagagacaatcgacacc
ttagtgcccagcttcctctatggcgcccgtgatgggataaagcgccgctttgcggcgcag
aaacagcttaagaatctgcgcacgccagacgatctactgatcgccctggccgatgccctg
agcgaagagaccgaccaggagcaggcgctggcaaaggcaatcgccaagcgttttcccatc
gcccttatcgatgagtttcaggacacagatccgctgcaatatcagatcttcagcagtatc
tatcaaggccagcaggtctcaacagacagcgacctcggcctcttgatgattggcgatcct
aagcaggcgatctacgcctttcggggcgccgatatccacacctatatccatgccaggggc
cagacggaaaaccattacagcctggacaccaactaccgctccagccaggccatggtcgaa
gcggtcaatcagctgttctcaagaagcgtcgatccctttatcagccaggcgatccccttt
gagttcatcaagccctcccccatggcggcagagaaacgcttggtcgagaaggtacctcaa
acgagcgcgctgcggcttaagctgctcggcgaagatcccaacgccggactcaataaggcc
agcgcccgcagccagttggccgaagatgccgccaacgagataaccaggctgctcaacgag
gctcagcgcggcgagtgcttgaaacaagataagccgctcaaggcaaaagatatcgcggtg
cttgtcagggatcgcaacgaggccgcctacatcaaatcggcgctgagtagccgagggata
ggcgccgtctttctcagccgcgacagcgtattcgataccctggtggccaaggaacttgcc
ctggtgctactggccatcgccaatcccaaggatgagcgcgcgctgcgcagcgccatggcc
accgccctgctgggctatgatgcccaggcgatccatggctttaatctggatgaagatgtg
cgtcagcagcagctcgaggccttcgacaacctgcatcagacctggctcaagcgcgggatc
atgccctgcatgatggccttggcggccgacacccgcctcatcgagcgtctgttgactgca
gatgaggggcagcgccgcctgaccgatttcaggcacctcggtgaactgctgcaacaaaaa
gctatggagctcgacgggatcagcgccctgctcaactggtatcagcagacgctgatcgag
gtgagcagcacggaagaagcccagctcaggctggagagcgagcagaatctggtacagata
gtcaccatacacaagagtaagggtctggaatatcccatctgtttcctgcccttcgtcagc
ctggccagagacaatcgtcgcaagcctgcgcctatgctctaccacgagcaagacgccctg
gtgtgggatatcgaccagagcgacgaaggctgggccaaatacaaggcggagaatctcgcc
gaagatctgcgcctgctctatgtggcgctaacccgccccgtgctggcctgctactgctat
gtcgccaaccattcgcgcttcaccaaacgtgacggcatcagcagccagttgttcgagaca
gccatcggctacctgctgggcatagagaccaaggcctgcgagtttgccgacattcaggcc
gccgcccaggcgctggcgagcgaggctatctcggtcgatctggtggacggcgacgcgccc
aagttagactttgaccctatcgacactgccgatgccgtcaagctggcgccgcggccactt
agccgcaggcgcgagatcccctggcgggtgggcagctactcaggcctggtaaaacactca
gctcacgagcaggtcagcccaggtatgggcgatgaggcctttcccgaacttgaacagtta
gctcccgatagcgaacagctgtccaggtttagcttcgagcgcggcgccaacgcggggagt
ttcctccactgggtgctggagcagatagactttacccaggccgataccagcctaggcgat
gagctgcccaaggctatggagcgcttcggtatcgatagcgagtggcaagagatgctgcat
gcctggtatctggatcttctgcatgtgccgctcgatggtgatgcgctgcgtcttgcgagc
ctaagccatgcacaaaaactggtggagatggagttttacatgcctataggcaagctcgat
gcacctgggcttaatcagctgctgagtcagtatggctatagcgccgccctgagcttcgag
accctagaggggatgctcaagggctttatcgacttaaccttcgaatatcagggcaagttc
tatatcgccgactacaagtccaaccatctgggggatcatctgagccattatgaaaagccc
gccatgcaacgggccatcgccggtcatcactatgacctgcagtacatcatctatagcctg
gcactgcatcgctacctcaagctgcgccttcccggctaccagtatgaccagcatgtaggc
ggctgctactacctcttccttaggggcatgtcggccaactcaccgagtacaggtgtctat
tacgacaagccgccccttggactgatccaggccctggacaccctacttagctacgctgag
gccagcgagtctcaagctgattcacaagcagagtctcaagcagagtcccaagctgagtct
cagccgcactcgccaacagacaggcaatctgacatgccatcaggcccagcacaaggagag
ctagacctatga
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