Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_4344
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Entry
SHJGH_4344 CDS
T02531
Name
(GenBank) transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHJGH_4344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sho03400
]
SHJGH_4344
Enzymes [BR:
sho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHJGH_4344
DNA repair and recombination proteins [BR:
sho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SHJGH_4344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGF64009
LinkDB
All DBs
Position
complement(4971177..4974719)
Genome browser
AA seq
1180 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAIRAAADGNRPHVDLVGPPAARPFAIAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPEQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSPDDP
GTGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNDVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADLELEADTLKLGMHAPETYRGDTARALADTKGWLADGWRAVFLTEGHGPAA
RTVEVLGGEGIAARLDNDLGELSPSVVHVSCGSIEYGFVDPALKLAVLTETDLSGQRTAT
RDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDSPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALSRFQTDTEAKA
VLEGLKDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLEAGE
PSAGGAEEPPLEVKIELPVDAHVPHYYAPGERLRLQAYRSIASANSEEDIKAVREELTDR
YGKLPEPVENLLLVAGLRMLARACGVGEVVLQGTNIRFAPVELRESQELRLKRLYPGTVI
KPAAHQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggaccccgccctcgcggaagcgatc
agggcggcggcggacggcaaccgcccgcacgtcgacctggtcggcccccccgccgcccgc
cccttcgccatcgccgccctggcccgtgaggccggccgcccggtgctggcggtcaccgcg
accggccgggaggccgaggacctcgccgccgccctgcgctccctgctgcccgaacagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctcgcccaccccagccccgacgacccc
ggcaccggcccggtctccgtcgtcgtggcccccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggaaccggtggccctgaggaccggccagagcgccgacctgaac
gacgtcgtcgaagccctcgccgccgccgcgtacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggcgcccccgtgccgcgagctgctg
ctcaccgacgacgtccgcgcacgcgcgcgtgccctcgccgaggaacacccggagctcggc
gaactcctgaacaagatcgccgagggcatcgcggtcgagggcatggagtccctggccccg
gtcctggtggacgacatggagctgctgctcgacgtcctgcccaagggcgccatggccgtc
gtctgcgacccggagcgggtccgcacccgcgccgccgacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgcgaccgcgcgcgtgagctggacatgatg
tggtggtcggtgtcgccgttcgcggccgacctggagctggaggcggacaccctcaagctc
ggcatgcacgcccccgagacctaccgcggcgacaccgcgcgggccctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtgttcctcaccgagggccacggcccggccgcg
cgcacggtggaggtcctcggcggcgagggcatcgccgcccgcctcgacaacgacctcggc
gaactcagcccctccgtggtgcacgtctcctgcggctcgatcgagtacggcttcgtggac
ccggcactcaagctcgccgtgctcaccgagaccgacctgtccgggcagcgcaccgccacc
cgcgacggcgcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtacctggtcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccggctgtacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcacccaccctgcaccgcctgggcggcgccgactggacgaagaccaag
gcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctctacagcgcc
cgcatggccgcccccggccacgccttcggccccgactccccctggcagcgggagctggag
gacgccttcccctacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgggccgccttcaaggccgtacaggacggcaagcaggtcgccgtc
ctcgtccccacgaccctgctggtgcagcagcacttcggcacgttctccgagcggtacgga
cagttcccggtgaacgtgcgggccctgtcccgcttccagaccgacaccgaggccaaggcc
gtcctggaaggactgaaggacggctcggtggacgtcgtcatcggcacccaccgcctgttc
tcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctcaccatg
tccgccaccccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccacgcccccggaggagcgccacccggtgctcaccttcgtcgggccctacgag
cagaagcagatcggcgccgccatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgcgcggcggccaggctccgcgacatcgtcccc
gaggcacgcatcgccacggcccacggccagatgtcggagtccgcgctggagcaggtggtc
gtcgacttctgggagaagaagttcgacgtcctggtctcgaccacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctcatcgtggagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgggtcggccggggccgcgagcgcggctacgcgtacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcgcctggcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggccgtcgcggactaccggcggcagctggaggcaggggag
ccctcggcgggaggagcggaggagccgccgctggaggtcaagatcgagctgccggtcgac
gcgcacgtcccgcactactacgcgcccggcgagcgcctgcgcctccaggcgtaccgctcg
atcgcctcggccaactccgaggaggacatcaaggccgtccgcgaggaactcaccgaccgc
tacggcaagctgcccgagccggtggagaacctgctgctggtcgccgggctgcggatgctc
gcgcgcgcgtgcggcgtcggcgaggtcgtcctccagggcaccaacatccgcttcgcgccg
gtggaactgcgcgagtcgcaggagctgcggctcaagcggctctacccgggcacggtcatc
aagcccgccgcgcaccaggtgctggtcccgcgcccgaagaccgcgaaggtgggcggcaag
ccgctggtcggccgagaactgctggcctgggtcggcgagttcctcacctccgtcctgggg
tga
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