Sturnira hondurensis: 118975141
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Entry
118975141 CDS
T07222
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
shon
Sturnira hondurensis
Pathway
shon03013
Nucleocytoplasmic transport
shon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118975141 (UPF1)
03015 mRNA surveillance pathway
118975141 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shon03019
]
118975141 (UPF1)
Enzymes [BR:
shon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118975141 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118975141 (UPF1)
Messenger RNA biogenesis [BR:
shon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118975141 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118975141 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118975141
NCBI-ProteinID:
XP_036884784
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGTGAGAAAGQLDSQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSSMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtatgggcccagctcgcagacgctcactttcctggacactgaggag
gccgagcttctcggcgccgacacgcagggctcggagttcgagttcaccgacttcactcta
cccagccagacgcagactcctcccggaggccccggtggccccggaggtggcggcccaggg
gtaccggtcggcacgggtgcgggcgctgctgccggacagctcgactcccaggttggagga
cctgagggcatcctgcagaatggggctgtggatgacagcgtggccaagaccagccagttg
ctggctgagttgaacttcgaagaggatgaagaggatacctattacacaaaggatctacca
gtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaatgggcgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggggagacg
gtcctggagtgttacaactgtggctgccgcaacgtcttcctcctcggcttcatccctgcc
aaggccgactcggtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggatcgctgcttcctg
tcctggctggtcaagatcccttcagaacaggagcagctgcgggcccggcagattactgcc
cagcagatcaacaagcttgaggagctgtggaaggagaatccttctgccacgttggaggat
ctggagaagccgggggtggacgaggagccgcagcacgtcctcctgcggtatgaggatgct
taccagtaccagaacatattcgggcctctggtcaagctggaggccgactatgacaagaag
ctgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcttgcggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgacaattatggt
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacacataac
ttccaggtggatttcgtgtggaagtccacctcatttgacaggatgcagagtgcactgaag
acctttgctgtggatgagacctccgtgtcgggctatatctaccacaaactgctcggtcac
gaggtggaggatgtgatcatcaagtgccagctgcccaagcgcttcacagcacaggggctg
cctgacctcaaccactctcaggtttacgctgtgaagactgtgctgcagagaccgctgagc
ctgatccagggaccaccaggaacagggaagactgtgacctcggccaccattgtctaccac
ctggcacggcagggcaacgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagacaggactgaaagtcgttcggctctgcgctaagagc
cgtgaggccatcgattccccggtgtcattcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctccagaagctgcagcagctcaaagacgagactggggagctgtcg
tctgctgatgagaagcgataccgagccctgaagcgcacagctgaaagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggagaccccaggctcgccaagatg
cagttccgctccattctaatcgacgagagcactcaggccacagagccagagtgcatggtc
cccgtggtccttggagctaagcagctgatcctcgtgggcgaccactgccagctgggccct
gtggtgatgtgcaagaaggcagccaaggcagggctgtctcagtcgctgtttgaacgcctg
gtggtgctgggcattcgtccaatccgcctgcaagtccagtatcggatgcaccctgcactc
agtgccttcccatccaacatcttttatgagggctctctgcagaacggtgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccaatgttcttc
tatgtgacccagggccaggaagagatagccagctcgggcacctcctacctgaacaggacg
gaggctgcaaatgtggagaagatcaccacgaagctgctgaaggcaggcgccaagccggac
cagattggcatcatcacgccttatgagggccagcggtcctacctggtacagtacatgcaa
ttcagtggctccctgcacaccaagctataccaggaggtggagattgccagtgtggatgcg
ttccaggggcgtgagaaggacttcatcatcctttcctgcgtgagagccaatgagcaccaa
ggaatcgggtttttaaacgacccccggcggcttaacgtggccctgacccgagcgagatat
ggggtcatcattgtaggcaaccccaaggctctgtccaagcaaccgctgtggaaccatctg
ctgaattactataaggagcagaaagtgctggtggaggggcccctgaacaacctgcgggag
agtctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgactacagccatgtatgatgcccgggaggccatcatcccagggtcagtctatgac
cggagcagccagggccggccctcgagcatgtacttccagacccatgaccagctcggcatg
atcagtgccggtcccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccaccaatgccgcccccggggtactttgggcaggctaatgggccagctgcaggtcgg
ggcaccccaaaaggtaagacgggtcgtggcggacgtcagaagaaccggtttgggcttcct
gggcctagccagacgaacctgcccagcagccaggccagccaggatgtggcatcgcagccc
ttctctcagggggccctgacgcagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcctgagctgtcccaggacagttaccttggtgatgagtttaag
tcccagatcgatgtggcgctgtcgcaagactctacgtaccagggggagcgggcatatcag
catggtggagtgacggggctgtcccagtattag
DBGET
integrated database retrieval system
