Shigella sp. PAMC 28760: A0259_13285
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Entry
A0259_13285 CDS
T04390
Symbol
yebU
Name
(GenBank) 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF
KO
K11392
16S rRNA (cytosine1407-C5)-methyltransferase [EC:
2.1.1.178
]
Organism
shq
Shigella sp. PAMC 28760
Brite
KEGG Orthology (KO) [BR:
shq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shq03009
]
A0259_13285 (yebU)
Enzymes [BR:
shq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.178 16S rRNA (cytosine1407-C5)-methyltransferase
A0259_13285 (yebU)
Ribosome biogenesis [BR:
shq03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
A0259_13285 (yebU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
YebU_pre-PUA_dom
Methyltr_RsmF_N
Methyltranf_PUA
Methyltransf_31
PCMT
TRM
Methyltransf_25
FtsJ
Ubie_methyltran
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AMR25361
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Position
2646075..2647514
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AA seq
479 aa
AA seq
DB search
MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPY
GWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQR
VMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF
GAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGG
TLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDC
EGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAAASVGLNWDGNLRLWQR
DKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALATPDNVNAFELTPQE
AEEWYRGRDVYPQAAPVADDVLVTFQHQPIGLAKRIGSRLKNSYPRELVRDGKLFTGNA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
gtggcccaacacaccgtttatttcccggacgcctttctgacacaaatgcgcgaagcgatg
ccttcgacgctctcatttgatgattttcttgccgcctgtcagcgcccgttgcgccgcagc
attcgcgttaatacgctgaaaatctccgttgctgatttcctgcaattaaccgctccttat
ggctggacgcttacgccaattccgtggtgtgaagaaggtttctggattgaacgcgacaat
gaagatgcattgccattgggtagtaccgccgagcatttaagcggcctgttttatattcag
gaagccagttcaatgttgcccgttgccgccttgtttgctgacgataatgcaccacagcgg
gtgatggatgtcgcagctgcgccaggctccaaaacgacgcaaattgccgcgcggatgaat
aacgaaggggcaatccttgccaatgagttttccgccagtcgggtaaaagtgttacatgcc
aatatcagccgctgtggcatcagtaatgttgcgctcacacattttgatggccgcgtgttt
ggtgcggcagtgccagaaatgttcgatgccattttgctggacgctccctgctctggcgaa
ggcgtggtgcgtaaagatcccgatgcgctaaaaaactggtcaccagaaagcaatcaggaa
atcgcagctacacaacgggagcttatcgacagcgcctttcatgcattacgtcctggtggt
acgctggtttactcgacctgtaccttaaaccaggaagaaaacgaagccgtttgcctgtgg
ctgaaagagacttaccccgacgcagtagagtttttaccacttggcgatctcttccctggt
gcaaacaaagcgctgaccgaagaaggctttttgcatgttttcccacaaatttacgactgc
gaaggcttcttcgttgctcgtctgcgtaaaactcaggcgatccccgccttacccgccccc
aaatacaaagtgggcaatttcccgttcagcccggtgaaagatcgcgaagccggacaaatt
cgtcaggcggctgcaagtgttggcttaaactgggatggaaacctgcgactctggcaacgc
gacaaagaactgtggttgttcccggtgggcattgaagccctgatcggtaaagtccgattt
tctcgcttggggattaaacttgccgaaacgcacaacaaaggttatcgctggcagcatgaa
gcagttattgcccttgccacccccgacaatgtgaacgcttttgaactgacaccgcaggaa
gcggaggagtggtatcgcgggcgcgatgtttacccgcaagccgcgccagtggcggatgac
gtgttggttactttccagcatcaaccgattggtttagccaaacggattggttcgcgattg
aaaaacagctatccgcgtgaactggtgcgcgatgggaaactttttaccggtaacgcctga
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