Sarcophilus harrisii (Tasmanian devil): 100924558
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Entry
100924558 CDS
T02286
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100924558 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shr03021
]
100924558 (PCF11)
03019 Messenger RNA biogenesis [BR:
shr03019
]
100924558 (PCF11)
Transcription machinery [BR:
shr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100924558 (PCF11)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100924558 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
100924558
NCBI-ProteinID:
XP_031817706
Ensembl:
ENSSHAG00000017830
LinkDB
All DBs
Position
3:510003363..510033395
Genome browser
AA seq
1694 aa
AA seq
DB search
MSEPAPAEAGTVGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPTPSTVV
SSPGISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSV
QQGASNIVPGSAPSKLLVSQIPPMAIKASHQVSVQPEKSRPSSSSQLQDMKVTNRDPRLN
RISQHSSHGKEQSHRKDFLVNAMNQSDIKANKSMPADKQNSSKQEKSKSSEKITKKELDQ
LDTKSKSKSPSPLKNKFSHTKDIKNQESESGRGVPEMSKRDPRLKKHLQDKPDSKDDDLK
EKRKSSEKKDKEEHVKSSEHRLTGGRNKIINGIVQKQDAGTEESEKQGTKTGRSSTRKRS
RSRSPKSRSPITHSPKRRDRRSPKRRQRSISPSTSTPKTGKLRQSGVKQSHVEEFAQASR
DERNSNKRSTKQDTRDPRRVKKTQEERPQETLNQHSTKSGSEPKENVENWQSSKSTKRWK
SGWEENKSLQQGEEHQGLGKSPHLRHRESWGSAKGILSSRAPKQQHRLSVDANLQIPKEL
TSASKRELLKKANDSLTSGEITQDEFLVVVHQIRQLFQYQEGKHRCNVWDSPTEENKGGL
KKKPLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYHLTDALLSGIECEPSKSK
HTGRSSGAQFDRKEQFNERSRRLSPISGSRTYAENLSPHDGRRRHEEQVSAKGVREEQRS
PFSERFALKRPRYEDSDKTFADSPASRYSSLDTTNQRLTALAEDRPLFDGPSRPSVARGD
GPTKMIFEGPNKPNPRIDGPPTPASLRFEGSPGQIGGGGPMRFEGPQGQLGGGCPLRFEG
PQGPGGTPLRFEGPLGQAGGGGLRFEGAAGLRFEGPTGGLRFEGPAGQNVGGLRYEGPRG
QPVGGLRFEGPHGQPVGALRFENPRGQPVGGLRFEGSHGASGSGIRFEGPHGQPGGGIRF
EGPLLQQGGGMRFEGPHGQSVAGLRFEGQHNQLGGSLRFEGPHGQPGVGVRFEGPLVQQG
SGMRFEGPSVQGGSMRFEGPLGQGGPRFEGCHASRFDGQPGQPSLLPRFDGLHGQPGPRF
ERTPGQQGPQRFDGPPGQQVQPRFDTGPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQR
LDAVSFSQTGPYNDPPNSAFNAPSQGIQFQRHEQMFDTPQGPNFNGPHGPGAQNFSNPLN
RASGHYFDEKNLQGPQFGNFSNLPTPIAVGNIQPSQQVLSGVTQPVAFGQGQQFLPVHPQ
NPGTFVQNPAGALPRAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVATQPP
PEEEEEDQSEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADH
LDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQ
EAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYED
YQNTSSFDCTPSPSKTPVENPLNIMLNIVKKELQEPCDSSKVKEEPVDITPACTDDSIDT
PTEIKTEPDTVESV
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccggcgccggccgaggccggtaccgtgggggcccgggaggacgcctgtcgg
gattatcagtcgtctctggaagacctgaccttcaacagtaaaccgcacatcaatatgctg
accattctggctgaggagaacctgcctttcgccaaggagatcgtctccctcatcgaggcc
caaaccgccaaggctccttctacagagaagctccctgttatgtatcttatggattccatt
gtgaagaacgttggaagagagtatcttactgcctttactaaaaacctagtagcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgttcc
acatgggatgacattttccctttgaagaaactctatgccttggatgtcagagttaattca
ttagatcctgcttggccaattaagcctctaccccccaatgtgaatacttctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagcctcctacacctagtacggtggtc
agttcccctggtatctccactcctccaattgtccctgatatccaaaagaatttgactcaa
gagcaactgataaggcaacagctgctggcaaagcaaaaacagttgttagaacttcaacag
aaaaaattggagctggagctggaacaaactaaggcacaattggcagtttctcttagtgtt
cagcaaggggcatctaacatagttcctggatcagcaccttccaaattacttgtttcacaa
attccacctatggcaattaaagcttctcatcaggtttctgtgcagcctgaaaagagtcgt
ccttcctcctcttcacagctccaggatatgaaagtaacaaatagagatcctcgtcttaat
cggattagccaacattcttctcatggtaaagagcaaagtcacaggaaagactttctagta
aatgcaatgaatcagtctgatatcaaggcaaataaatctatgcctgctgataaacaaaac
tcatcaaagcaagaaaaaagtaaatcaagtgaaaaaatcacaaagaaagaacttgaccaa
ttagatactaaatccaaatctaaatctccttcacctttgaaaaacaaattttctcacaca
aaagatataaaaaatcaggaatctgaaagtggtcgaggggtccctgaaatgagcaagaga
gatccccgattaaaaaaacacctccaggataaacctgatagcaaagatgatgacttaaaa
gagaagagaaaatcttcagaaaaaaaagataaagaggagcatgtgaagtcatctgaacac
agactcactggaggtagaaataaaattataaatggtattgtacagaaacaagatgctggt
actgaagaatcagaaaaacaggggacaaaaacaggaagatcaagtactagaaaacgatct
cgatcacgatctcctaagtctcggtcaccaatcacgcattctccaaaaaggagagatagg
cgctcacctaaacgaaggcaaaggagcatttctccttctacttctacacctaaaactgga
aagctacgccaatcaggagttaagcagtcacatgtagaggaatttgcacaagcttctcgt
gatgaaagaaattctaataaaagaagtactaagcaggacacccgggatcctaggcgagtt
aaaaagactcaggaagagagaccacaagaaactctaaatcagcattctacaaaatcagga
tctgaaccaaaggaaaatgtagaaaattggcaaagctctaagtctacaaaaagatggaaa
tctggttgggaggaaaataaaagtttacagcagggtgaagagcatcaaggacttggtaaa
tcacctcatctaaggcatagagagagttggggaagtgctaaaggaattttatcatcccga
gcccccaaacaacaacatcgcttaagtgtagatgccaatcttcagattcctaaagaatta
acttctgcaagcaaaagagaattacttaaaaaggcaaatgatagtttaacatctggtgaa
attacacaggatgaattccttgttgttgttcatcagattcgtcagctctttcaatatcaa
gaaggaaaacatagatgcaatgtatgggatagtcctacagaagaaaataaaggtggatta
aaaaagaaacctctcttatctgatgctgaattaacatattatgagcataaagctaaactc
aaaaggacacaggttcagcattcatttccaagacttgatctcttagatcctgatatattt
gattaccatttgactgatgctttgttgtctggaatagaatgtgaaccatccaaaagtaaa
catacaggtaggagtagtggagcacagtttgacagaaaagaacaattcaatgaaagatca
aggcgtctttctccaatatctggaagccgtacttatgcggagaatctttccccccatgat
ggtcgaagaaggcatgaagaacaagtttctgccaaaggtgtccgagaagagcaaaggtct
ccattcagtgagcgttttgcacttaagagacctagatatgaagattcagataaaacattt
gcagacagcccagcatcaagatattcaagcctcgatacaacaaatcagagactcacagca
ttagctgaagatagaccattatttgatggaccttctaggccatctgtagcaaggggagat
ggcccaactaaaatgatttttgaaggacctaataagccaaaccctagaattgatggacct
ccaacaccagcttctcttcggtttgaagggtcaccaggacaaatagggggaggggggccc
atgaggtttgaaggaccacaaggtcagttaggaggtgggtgtcctttgagatttgaaggt
cctcaaggaccaggagggactcctttgaggtttgaaggaccacttggacaggcaggagga
ggtggcttaaggtttgaaggagctgctggtttgcggtttgagggtcccacaggtggtttg
agatttgaaggcccagctggccagaacgtgggtggacttaggtatgaaggtccccgtggt
cagcctgtgggtggtcttagatttgagggacctcatggtcagcctgtgggtgctctaagg
tttgagaatcctcgaggtcagcctgtaggtggactcagatttgaggggagccatggtgca
tcaggaagtggaattaggtttgagggaccccatggtcagccaggtggtggaatcagattt
gaaggccctttgctccagcaaggtggtggtatgagatttgagggaccccatggccagtca
gtggcaggtctaagatttgaaggacaacataatcagcttggtggaagccttcgatttgaa
ggaccacatggtcagccaggggttggggtcagatttgaaggacccttagtccaacaagga
agtggaatgagatttgagggtccttctgtacaaggaggtagtatgagatttgaaggacct
ttaggccaaggtggtccaagatttgaggggtgtcatgcttcaagatttgatggtcagcca
ggtcaaccatctctcttgccaagatttgatggcctgcatggtcagcctggtcctaggttt
gaaagaactcctggtcaacagggcccacaaaggtttgatgggccacctggtcagcaggta
caaccaagatttgatacagggcctcagagatttgatggtccacaacaccagcaagcatca
agatttgatattcctcttggtcttcaaggtgcaaggtttgacaatcatccttcacagaga
cttgatgcagtctcttttagtcagactggcccatataatgaccctcctaacagtgcgttt
aatgcaccatcgcaaggaatacagttccaaagacatgagcaaatgtttgatacacctcag
ggaccaaattttaatggaccacatggccctggagcgcaaaatttctcgaacccacttaac
agagcatctggacattattttgatgaaaagaatcttcagggtcctcagtttggaaacttc
agtaatctgcccacgccaattgcagttgggaatattcagccatctcagcaggttctctct
ggtgttactcagcctgtagcttttggacaaggacaacagtttttaccagttcatccacaa
aatcctggtacttttgttcagaatccagcaggtgctcttccaagagcatatcccgataat
catctcagccaggttgatgtgaatgaactcttctcaaaactgctaaaaacaggaatactt
aaattatcccaacctgattcagcaacaactcaagtaaatgaagttgcgacacagcctcct
cctgaggaagaagaagaagatcaaagtgaagatcaagatgttcctgacctcactaatttc
acagttgaagaattgaaacagcgttatgatagtgttataaatcgcctgtatactggtatc
cagtgttattcttgtggaatgaggtttacaacatcacagactgatgtctatgcagaccac
ttggactggcattaccgacaaaatagaactgaaaaggatgttagcagaaaagttacacat
aggaggtggtactatagtctaacggactggatagaatttgaggaaatagctgatttggag
gaacgtgcaaagagccagttttttgaaaaagtacatgaagaggttgtgttgaaaactcaa
gaagctgctaaagaaaaggagtttcagagtgtccctgctggaccagctggggcagttgag
agctgtgaaatatgtcaggaacaatttgaacaatactgggatgaagaggaagaggaatgg
catttaaaaaatgctatccgagtagatggaaagatttaccatccatcatgttatgaagat
tatcaaaatacatcttcatttgattgtacaccatctcccagcaagacacctgttgaaaat
cccttgaatattatgttgaacattgtcaaaaaagaattgcaggaaccttgtgacagttcc
aaagttaaagaagaaccagttgatatcacaccagcttgtacagatgacagcatagataca
cctactgaaattaaaacagaacctgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
