Sarcophilus harrisii (Tasmanian devil): 100926132
Help
Entry
100926132 CDS
T02286
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100926132 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shr03400
]
100926132 (LIG4)
Enzymes [BR:
shr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100926132 (LIG4)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100926132 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100926132
NCBI-ProteinID:
XP_003765789
UniProt:
A0A7N4NYN2
LinkDB
All DBs
Position
3:complement(159144412..159156181)
Genome browser
AA seq
911 aa
AA seq
DB search
MATSQASRTVASQVPFADLCSTLERIQKSKSRPDKIKYFKEFLDSWRKFHDAIHKNEKEV
TDSFYPAMRLILPQLERERMAYGIKETMFAKLYIELLNLPKEGKDAQKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCPQQGSLTIQQVNDVLDLIASSKSANRKDLVKKNLLQLITQSSA
LEQKWLIRMIIKDLKLGVSQHTIFSLFHRDAAELHNVTTDLEKVCRELHDPSVGLSDISI
TLFSAFKPMLAAVADIQRIEKDMKHQSFYIETKLDGERMQMHKDGDVYKFFSRNGYDYTE
QFGDSSLQGSLTPFIHNAFKMNIQNCILDGEMMAYNPNTQIFMQKGNKFDIKKMVEDSEL
QTCYCVFDVLMVNNKKLGHETLRKRYEIIDSVFTPIKGRLEVVQKTEANTKKEVIDALNE
AIDKCEEGIVIKNPLSIYKPDKRGEGWLKIKPEYINKLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAETPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLSKHWKPFHKRTPPNSILC
GKEKPEVYIEPCNSVIVQIKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWYECMTLSELE
NLRGKASGKLATKHLFIAGDDEEPQEKKRKAVKVKKAITIIEHLKAPDLSNINKISNVFE
DVEFCVMSGTDSHSKSSLENCIAELGGYIVQNPGPDTYCIIAGTENVRVKNIISSNKHDV
VKAEWLLECFKAKEHVPWQPCFMIHMCPSTKEHFAREYDCYGDSYFADTDLLQLKEVFSR
IKNVKENSPKEMSPVITDLEYRYSWDNSPLSMFRQCVIYVDMYAIINDLTTQIQGTRLSI
KALELRFYGAQVISCLEEGVSHVIVGEDHSRVEEFKAFRRTLKKKYKILQDLWVTDSLKE
GNLQEENCYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccacttcacaagcttcgcgaacagtagcatcacaggtaccctttgcagatttatgt
tcaactttagaacgaatacaaaaaagtaaatcccgtccagacaaaatcaaatactttaag
gaatttttagattcgtggcggaaatttcatgatgctattcataaaaatgaaaaagaagtc
acggactctttttatccagccatgagacttattcttccacaactggaacgagaaaggatg
gcctatggaattaaagaaaccatgtttgctaaactttatattgagctgcttaatttacca
aaagaaggaaaagatgctcagaaacttttaaattacagaacaccaactggaactcgtgga
gatgctggagactttgcaatgattgcatactttgtgttgaagccccggtgtccacagcaa
ggaagcttaaccatacagcaagtcaatgatgttttagacttaattgctagcagcaagtca
gccaatagaaaggatctggtaaagaagaaccttcttcagctcataactcagagttcagct
cttgaacaaaagtggcttatccgaatgattataaaggacttaaaactgggtgttagccaa
catactatattttctctttttcatagagatgctgctgagttgcataatgttacaactgat
ctagaaaaagtgtgcagggaacttcatgatccttcagttggactcagtgatatttcaatt
acattattttctgcttttaaaccaatgctagctgctgtggcagatattcagcgaattgaa
aaggacatgaaacatcaaagtttctacatagagacaaaactagatggtgagcgtatgcaa
atgcacaaagatggagatgtgtataaattcttttctcgaaatggatatgattacaccgaa
caatttggtgactcttcccttcaaggttctttaacaccatttattcataatgcattcaaa
atgaacatacagaactgtattcttgatggtgagatgatggcctataatcccaacacacaa
atatttatgcagaagggaaataagtttgatattaaaaaaatggtagaagattctgaacta
cagacatgttattgtgtttttgatgtgttaatggtcaataataaaaaattgggacatgag
accttgagaaaaaggtatgaaattattgatagtgtttttacaccaataaaaggtagacta
gaagtggtacaaaaaacagaggctaacactaaaaaagaagtcattgatgctttaaatgaa
gcaatagataaatgtgaggagggaattgtgattaaaaatccactttccatttacaaacca
gataaacgtggtgaaggatggttaaaaattaagccagagtatataaataagttaatggat
gaattggatattttaattgttggtggttattggggtaaaggttctcggggaggaatgatg
tctcattttttgtgtgcagtagcagaaacaccccctcctggtgaaaaaccttctgtattt
catactctttgtcgtgttggttctggatacactatgaaagaactatatgaccttggtttg
aaattatccaaacactggaaaccttttcataaaagaactccaccaaatagcatcttgtgt
ggtaaagagaaaccagaagtttatatcgagccttgtaattctgtcattgttcaaattaaa
gcagcagaaattgtcagcagtgatatgtataaaactgattgtacactacgcttccctcgc
attgaaaagataagagaagataaagagtggtatgagtgtatgactctgagtgaattagaa
aaccttagaggaaaagcatctggaaagcttgctactaaacacctttttatagctggtgat
gatgaagaaccacaggaaaaaaaacggaaagctgttaaggttaagaaagctattactatt
attgagcacttaaaagctcctgatctttctaacataaacaaaatttcgaatgtatttgaa
gatgtggaattttgtgttatgagtggaacagacagccattcaaaatccagtctggaaaat
tgcatagcggaattgggtggttatattgtacagaaccctggcccagacacatattgtata
attgcaggtactgagaatgtgagagtaaaaaatatcatctcttcaaacaagcatgatgtg
gtaaaggcagaatggctcttagagtgttttaaggccaaagagcacgttccatggcagcct
tgctttatgattcacatgtgtccatccacaaaagaacattttgcccgtgaatatgactgc
tatggggacagttattttgctgatacagatctgctacaactgaaggaagtattctcaaga
attaaaaatgttaaggagaatagtcctaaagaaatgtctccagtaattacagatttagaa
tatcggtattcttgggataacagccctctcagtatgttccgacagtgtgtcatatatgtg
gatatgtatgctattattaatgacctcacaacacaaatccagggaaccaggctgtccatt
aaagctttggagctgcgattttatggagcacaggttatttcatgtttagaagaaggagtg
tcccatgtaattgttggggaggatcacagtcgtgttgaggaatttaaagcttttcgtaga
actcttaagaaaaagtataaaatcttacaagatctttgggtcactgattctttgaaagag
ggtaatttgcaggaagaaaattgttacttgatctga
DBGET
integrated database retrieval system