Sarcophilus harrisii (Tasmanian devil): 100928463
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Entry
100928463 CDS
T02286
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04120
Ubiquitin mediated proteolysis
shr04137
Mitophagy - animal
shr04141
Protein processing in endoplasmic reticulum
shr05012
Parkinson disease
shr05014
Amyotrophic lateral sclerosis
shr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100928463 (PRKN)
04120 Ubiquitin mediated proteolysis
100928463 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100928463 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
100928463 (PRKN)
05014 Amyotrophic lateral sclerosis
100928463 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
100928463 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100928463 (PRKN)
04121 Ubiquitin system [BR:
shr04121
]
100928463 (PRKN)
03029 Mitochondrial biogenesis [BR:
shr03029
]
100928463 (PRKN)
Enzymes [BR:
shr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
100928463 (PRKN)
Membrane trafficking [BR:
shr04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
100928463 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
100928463 (PRKN)
Xenophagy
Other xenophagy associated proteins
100928463 (PRKN)
Ubiquitin system [BR:
shr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
100928463 (PRKN)
Mitochondrial biogenesis [BR:
shr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
100928463 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Crinkler
Motif
Other DBs
NCBI-GeneID:
100928463
NCBI-ProteinID:
XP_031824247
LinkDB
All DBs
Position
4:128340861..130179064
Genome browser
AA seq
494 aa
AA seq
DB search
MRRARGLGAGLCACVSPPTPVLRATTYFVTMIVFVRFNSSHGFPVEVDSDTSIFQLKEVV
AKRQGVPADQLHVIFAGKELRNDLTLQNCDLEQQSMVHVVQRAQRNDQKGDEANQNNPGP
SRKGPGREPESLTRVDLSSSILPAYSIGLAVILDNEDKDASHKAGDSDIPTYNSFYVFCK
GVCQSIQPGKLRVRCSTCKQATLTLDQGPSCWDDVLIPNRMSGICHSLDCDGIGAEFYFK
CGAHPTSANETSVALNLITTNSRKISCITCTDVRNPVLVFQCIHRHVICLDCFHLYCVTR
LNDRQFIHDPMLGYSLPCVAGCPDSLIKELHHFRILGEEQYNRYQSYGAEEWVLQMGGVL
CPSPGCGAGLLPEPGVRKITCEPSNGLGCGFVFCRDCKEEYHEGECSTFFEASGSSAQAF
AVDEQAAERARWEEASKETIKKTTKPCPRCHIPVEKNGGCMHMKCPQPQCKFEWCWNCSL
EWNRTCMGDHWFDV
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgagcgcggggcctaggggcaggcctctgtgcgtgtgtaagcccccctacgcct
gtccttagagccaccacctactttgtgaccatgatagtgtttgttaggttcaactccagc
catggtttcccagtggaggtcgattcagacaccagcatcttccagctcaaggaggtggtt
gctaagcgacaaggggttccagctgaccagttgcatgtgatttttgcagggaaggagctt
aggaatgacttgacactgcagaactgtgacctggagcagcagagcatggttcatgttgta
cagcgggcccagagaaatgaccagaaaggggatgaggctaaccagaacaatcctggaccc
tctagaaaggggccaggtagagaacctgagagcttaaccagagtagacctcagtagcagc
atccttcctgcttactctataggtctagctgttattctggataacgaggacaaagacgca
tctcataaagctggagattcagatatccctacttataacagcttctatgtgttctgcaaa
ggagtctgtcagagtattcagccaggaaaactcagggtacggtgcagcacctgtaaacag
gcaaccctgaccttggaccagggtccatcatgctgggatgatgtcctgattccaaacaga
atgagtggcatttgtcattctctagattgcgatggaattggagcagagttctactttaaa
tgtggtgcacacccaacctctgccaatgagacatcagtggctctgaaccttattacaaca
aacagtcgcaaaatcagctgtatcacatgtactgatgtcagaaatcctgtcttggtgttc
cagtgtatccatcgccacgtaatttgcctagactgcttccatttatactgcgtaacaaga
ttgaatgatcggcaattcattcatgatccaatgcttggttattcccttccttgtgtggct
ggctgtccagactccttgataaaagagcttcatcacttcagaattcttggggaagaacag
tacaatcgatatcaaagctatggagctgaggaatgggtcctgcaaatgggaggggtactg
tgccccagtccagggtgtggagcaggtctactccctgaaccaggagtgaggaaaatcaca
tgtgagccaagcaatggcctgggctgtgggtttgtcttctgccgtgattgtaaagaagag
taccatgaaggggaatgcagcaccttctttgaagcctcaggatcatcagcccaggccttt
gctgtggatgaacaagctgcagagagggcaagatgggaggaggcctccaaagaaacaatc
aagaaaacaaccaaaccttgtccccgttgccatataccagtggaaaaaaatggaggatgc
atgcacatgaaatgccctcagcctcaatgcaagtttgagtggtgctggaactgcagccta
gaatggaaccgaacctgcatgggagaccactggtttgatgtatag
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