Sarcophilus harrisii (Tasmanian devil): 100929203
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Entry
100929203 CDS
T02286
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03013
Nucleocytoplasmic transport
shr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100929203 (UPF1)
03015 mRNA surveillance pathway
100929203 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100929203 (UPF1)
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100929203 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100929203 (UPF1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100929203 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100929203 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100929203
NCBI-ProteinID:
XP_012397624
Ensembl:
ENSSHAG00000010499
LinkDB
All DBs
Position
1:complement(667411345..667466741)
Genome browser
AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGGGAGG
PGAAGVGGAAGQLDAQVNGPDGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPV
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGD
EICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYF
QTHDQIGMISTGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGR
QKNRFGIPGTSQANLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtatgggcccagctcgcagacgctcaccttcttggacacggaggag
gccgagctgctgggtgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagacgccccctggggggcccggaggtggcggcggcggcgcgggcggg
cccggagccgcgggcgtcgggggtgccgcgggccagctcgacgcgcaggttaatggacct
gatggtatcctgcagaatggtgctgtggatgacagtgtagctaaaactagccaactgttg
gctgaattgaattttgaagaagatgaagaagatacttactatacaaaggatcttcctgtg
catgcttgcagttactgtggcatccatgatccggcttgcgtggtttactgcaatactagc
aagaaatggttttgtaatggacgcggaaacacttctggcagccacattgtaaatcatctt
gtaagagcaaaatgcaaagaagtaactctccacaaggatggacccttgggggagactgtg
ctggagtgttacaattgtgggtgtcggaatgtgtttctccttggcttcatacctgccaaa
gctgattcagtagtggtactcctctgcaggcaaccctgtgccagtcagagcagcttaaag
gatatcaattgggacagctcccagtggcagcctctgatccaggatcgctgctttctttcc
tggctggtaaagattccttctgagcaggagcagctgagagcacggcagattacagcgcaa
caaatcaacaaactagaggaactctggaaggaaaatccttcagcaactcttgaagatctg
gaaaagccaggtgttgatgaagagccccagcatgtcttgcttcgctatgaggatgcttat
cagtatcaaaatatctttggcccacttgttaaactggaagcagattatgataagaaactt
aaagaatcccagacccaagataacatcacagtcagatgggacctgggcctcaacaagaag
agaatcgcttacttcacgttgcccaagactgactctgatatgcgtcttatgcagggagat
gaaatctgccttcgctataaaggtgacctcgccccactgtggaagggaattggccatgtc
attaaagttccagataattatggagatgaaattgcaattgaattgaggagtagtgttgga
gcccctgtagaagttactcataacttccaagtggattttgtatggaagtccacttcattt
gacaggatgcagagtgcattaaaaacatttgctgtggatgaaacctcagtctctggctac
atttaccacaaactgttgggtcatgaagtagaggatgtgattattaaatgccagctgcca
aaacgttttacagcacaaggactccctgacctcaatcattctcaggtatatgcagtaaag
actgttttgcaacgacctttgagcctcatccagggaccacctggtacaggaaagactgtc
acatcagctacaattgtctaccatttggctaggcaaggcaatgggcctgtgctagtttgt
gctccaagcaatatagctgtggatcagttgactgagaagattcatcagactggactgaaa
gttgttcgtctttgtgctaaaagccgggaagcaattgattctcctgtatcttttttggca
ctgcacaaccagatcaggaatatggatagtatgcctgaactccagaagctacaacaactg
aaagatgaaacaggtgaactttcatctgctgatgaaaagcgttaccgagcattgaaacgc
acagctgagcgagaactgctcatgaatgcagatgtgatctgttgcacatgtgtgggagca
ggtgatccaaggcttgccaagatgcagttccgatccattttaattgatgaaagcactcag
gctactgaaccagagtgtatggtaccagttgttctcggagccaaacagctgatcctagta
ggagatcattgccagctggggcctgtagtcatgtgcaagaaagctgcaaaagcaggcttg
tctcagtccctatttgagcggctagtggtgttggggatccgtccaatccgcctacaagtc
cagtatcggatgcatcctgcccttagtgctttcccatctaatatcttctatgagggttcc
cttcagaatggcgtcactgcagctgatcgtgtgaaaaagggatttgatttccagtggccc
cagccagataaaccaatgttcttttatgtgacccaaggccaagaagaaattgccagttca
ggcacttcttatttgaacagaacggaagcagccaatgtggaaaagataactacaaagctc
ctaaaagctggtgccaaaccagatcagattggtattattacaccttatgagggtcaacga
tcttatctggtacaatacatgcaatttagcggctctctgcatacaaaactctaccaggaa
gtggaaatagctagtgtcgatgcattccagggacgagaaaaggacttcatcatcctttcc
tgtgtgagagccaatgaacaccaaggaattggatttttaaatgatcccaggcgtcttaat
gtggctcttactcgagcaaggtatggagtaattattgtgggcaaccctaaagctctttcc
aagcaaccactctggaaccatctattgaactactacaaggaacagaaagtgctggtagaa
ggacccctaaacaacctccgggagagcctcatgcaattcagcaagccccgcaaacttgtc
aataccatcaatccaggagcccggttcatgactactgccatgtatgatgcacgtgaagct
attatccctggatctgtctatgatcggagcagtcaagggcgtccatcgaatatgtatttt
caaactcacgatcagatcgggatgatcagcaccggacccagtcacgtgactgctatgaac
attcctattcctttcaaccttgtgatgccgccaatgccgccgccaggctattttggccaa
gccaacggtccagctgcaggccgtgggacaccaaaagggaagactggtcgtgggggacgc
caaaaaaatcgctttgggattcctgggactagccaggcgaacctcccaaatagtcaggcc
agccaagatgtggtctctcagcccttctcccagggcccattgactcagggctatatttcc
atgagtcagccatcccagatgagccagccggggctctctcaaccagaattatcccaggac
agttaccttggtgatgagtttaaatcgcagattgatgtggctctgtcacaagactctact
taccaaggagaacgggcataccaacacggtggagtgacagggctgtcacagtattag
DBGET
integrated database retrieval system
