Stereum hirsutum: STEHIDRAFT_142435
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Entry
STEHIDRAFT_142435 CDS
T03127
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
shs
Stereum hirsutum
Pathway
shs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
STEHIDRAFT_142435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shs03021
]
STEHIDRAFT_142435
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_142435
Transcription machinery [BR:
shs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
STEHIDRAFT_142435
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
STEHIDRAFT_142435
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
MerR_1
Motif
Other DBs
NCBI-GeneID:
18799091
NCBI-ProteinID:
XP_007309872
JGI:
Stehi1_142435
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MSMYSHPAPPYSQIPPQPSYSYPSYPAAYQYGPPSTSYLIDPVSFRRDYMGRLAELTVNS
RPIIQNLSMVAQEYSRYADVVTECIEQHIRRVPPWIKLPAWYLLDAISKNVHEPYARHFA
SIVAPLFLDSYAVVDPNTRSKMEEMLLTWRNGHPSGQRELFGVGPQVAIERGIWSGGSSD
PSFQQGQGFISKPQVLTELEFTLGQMERAVQMNPYDAQAQAHVNVLQQLRKLVEAGVSQK
ELQQILNQLRSMARPPSVAPHTPAPPMKYPPSSPNGTYYSEPAPYSAPPPPPIAPLQHQY
DQPFPSRESFEPAPPAPAPPSSSTFVHMDTTPPAPVASTSAAPAIPNISNLFEVLRKAGV
VSSTGSPTGAGQVQAATIASAQNPEDVKPENLVDPVREDTRSYRDAILSENIRLTGADIN
RRQPRIVEFLYNHLPVQCKQCGLRFTDSSLGKNQMQEHLDMHFRQNRKANQHVGRGHSRS
WFVALEDWIHDNGKGKGPADPSRPSNVKAAAAADAAKRDAELRAQFVVVPPGDEAKPIAC
PICKETLKSEFQEDDEEWVWKNAVDVEGRIYHATCHAEALMSTTSLAAKLRQELTGGGRS
RSTTPERTVKMRTKSESPVSPGKAQIIGVKRKAESTDEFSLGSLLNGGSNGGGGVDNGGV
GEDTGEPPVKKTVASATA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgtactctcatcccgcgccgccctacagccagatccctccccaaccttcatat
tcctatccgtcctatcccgctgcttaccagtatgggccgccttcgacctcttatctcata
gatcccgtctcttttcgtcgagactacatggggcggctcgctgaacttaccgtcaactcg
aggcccattattcagaatctctccatggtcgctcaagaatactcacgctatgctgacgtt
gttaccgagtgtatcgaacaacatattcgccgggtcccgccttggatcaagctccccgcc
tggtatctcttggacgccatctcaaaaaatgttcatgaaccatacgctcgtcatttcgcc
tccatcgttgcacccttgttccttgacagctatgcagtcgttgatccgaacactcgcagc
aagatggaggagatgcttctaacctggcgaaacggtcatccctctggccaacgcgaactc
ttcggtgtaggtccgcaggtagcgatagagagaggtatatggagtggaggctccagcgat
ccctcattccaacaaggtcagggtttcatctccaaaccccaggtcttgaccgaactagag
ttcacgctcggtcaaatggagagagcggttcagatgaacccatacgacgcacaggctcaa
gcacacgttaacgttctgcaacaactacggaagctcgtcgaggctggtgtctctcagaaa
gaacttcagcagatcctaaatcagcttcggtcgatggcgcgacccccgtctgttgctcct
catactcctgcgcctcccatgaaatatccaccgtcttcaccgaacggcacttattactct
gagccagctccgtactctgcgcctcctccgccgccaatcgctcccttacaacatcaatat
gatcaaccttttccatcgcgcgagtcatttgaaccagctcctcctgcacctgcacccccc
tcttcttccacgtttgtccacatggatactacaccacctgctcctgttgccagcacgtcg
gctgcccctgcgatacctaatatcagcaatctctttgaggttcttcgcaaagcaggtgtt
gtctcttctactggatcacctacgggtgctgggcaggttcaggctgctacgattgcatct
gctcagaacccggaagacgtaaagcccgaaaatttagtggaccccgttcgtgaggatacg
agatcgtacagggatgctatcttgtctgaaaatatcagactcaccggtgccgatatcaat
aggagacaaccacggatagttgaattcttatataaccacttgcctgtgcaatgtaaacaa
tgtggattgagattcacggattcttcgctcggtaagaatcagatgcaagagcatttggat
atgcatttcaggcagaaccgtaaagcgaatcagcatgttggcagagggcatagtcgcagt
tggtttgtcgctttagaggattggattcacgacaatggaaaaggcaagggcccggcggat
ccatcacggccttcgaatgtgaaggcagcagcagccgctgatgcggcaaaacgagacgcc
gagttgcgcgctcagttcgtcgtcgtccctcctggggacgaagctaagccgattgcttgt
cctatatgtaaggaaacattgaagtcagagttccaagaggatgacgaggagtgggtgtgg
aagaatgcggtcgatgttgagggacggatataccatgcgacgtgtcatgcggaagcgtta
atgtctactacgagtttggcggctaaactaaggcaggagctcaccgggggcggtcgcagt
cgctcgacgacaccggaacgtactgttaagatgcgtacaaagtctgagtcaccggtttcg
cctgggaaggctcaaatcatcggagtgaagcggaaggctgagtctacggatgagttcagt
ctgggaagtcttctgaatggcggaagtaacggaggcggtggtgtagataatgggggtgtt
ggagaggacaccggggagccgccggtgaagaagactgtggcatctgcaactgcatag
DBGET
integrated database retrieval system
