Stereum hirsutum: STEHIDRAFT_168636
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Entry
STEHIDRAFT_168636 CDS
T03127
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
shs
Stereum hirsutum
Pathway
shs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STEHIDRAFT_168636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shs03400
]
STEHIDRAFT_168636
Enzymes [BR:
shs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STEHIDRAFT_168636
DNA repair and recombination proteins [BR:
shs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
STEHIDRAFT_168636
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
LIG3_BRCT
PTCB-BRCT
DUF4073
Motif
Other DBs
NCBI-GeneID:
18803376
NCBI-ProteinID:
XP_007304350
JGI:
Stehi1_168636
LinkDB
All DBs
Position
Unknown
AA seq
1077 aa
AA seq
DB search
MLPTPAPTSPPHSPRFTQSQQPPSSEPGDPIEDILEPIDDIQYPPPPENNGSAPFGALVG
LFEKLQNERKHERRRRLLNAWFDHWREKVGPDLYPVLRLILPQKDRERALYGLKEKNLAR
LYIKAIPLEPKHPEAIRLLNWKRPSEADKTSGDFPLVLYDVVSKRSSVIEGSLTIEDINN
ILDELSTNIGKSDIQSRIIQRVYNRSTPEEQRWLVRIILKDLHVAVKETTVFSIFHPDAH
DLYNTCSDLKKVAWELWDTKKRLNAEDKEIQLFRPFTPMLCKRPTGKIEESVKEMGGRAF
ILEEKLDGERMQLHKRGNEFFYCSRKGKDYTYLYGKHVAAGSLTPHIAGAFDPRVEDIIL
DGEMLVWDPVSERNLPFGTLKTAALNKSKERLNPRPCFKVFDLLYLNGQSLITKSTRFRK
KNLRACVTPIKGHIEFVDEFIIKTAKEVREKMEEVMNDRGEGLVMKHPDSEYVLNGRNKD
WIKVKPEYMDNMGETVDVLVIGGKYGSGRRAGGVSSILCGVLDDRYKEGEPKYSTFVRVG
AGFSYTDYLWIRDKPWKEYDPNNPPAFLQVAKSKTLEDKPELYLEPEHSFIIKVKAAEIT
PTDAYHIGYTMRFPRALGIRDDLTVADCVTATALFDSVRSERKRKREEEMLGKPKKKRVK
VAKKPLILQEYKGSTDLKDVQVESDLFEGMAFAVVSDPKSRTQDEDKKNILKLIRANGGK
IVQVAKNQPGLLVVYDGTTTPYDIKAIMKKDFHDIIRSKWIHECIAAGSRYSVPLTKKYF
FHATSIRQEQPGFDEDAAGSETEPEDDDDERPSVSVTPAPASTLGKEQTQDADEDKTEDE
DEEETDPWFVIKPENSQRASVGDEGDEGEGTDPESEGDDVVDDIADGDRTEDEDENGGVG
WGGEDGDRTEDEDGDEWVNLSAKEGDEKGKGKMEARDGLVEHEDDPKAEDVKMGEDDSAM
EYDTERIFTHLRFYLDTHANARKHNLSVPVAQSKNEDIISQSFDKLSKLITDNGGRISTD
IDDPKLTHVLVDKRDTSRRREIGARTAKPKRRNVVLSSFIEDCLEEETLLDEAGYMP
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgctccccaccccggcacccacttcccctccacattctccgaggttcactcagtcacag
cagcctccatcctcagaacctggagacccgattgaagacatcctcgagcctattgacgac
atacaataccctcctcctccagagaataacggaagcgctccctttggcgctcttgttggt
ctatttgagaaactacagaacgagcgcaagcacgagaggaggcggagactcttgaatgct
tggtttgaccactggagagagaaagtcggaccggatttgtatcctgtgttgaggcttata
ttaccacagaaagacagagaacgcgcgctctacggcttgaaagagaagaatctggcaagg
ctgtatatcaaggctatcccacttgaaccgaagcatccggaagccatcaggctgctgaac
tggaagaggccgtctgaagctgataaaacatcgggcgacttcccactcgtgttgtatgat
gtcgtgagcaagcggtcttctgtcattgaaggctccttgactattgaagacatcaataac
attctcgatgaactgtcaaccaacattggcaaatcagatattcagtcgaggattattcag
agagtatataatcgctcgacccctgaagagcagcgttggctagtgcgaatcattttgaag
gatctacatgttgccgtgaaagagaccaccgtgttttcaatctttcatcccgacgctcat
gacctatacaacacttgctctgacctcaagaaagtggcatgggagctctgggacacgaag
aagcggctcaacgcagaggacaaagaaatacaattgttccgaccgttcactccgatgctc
tgcaaacgacctactggcaagatcgaagagtctgtcaaagagatgggaggccgtgcattc
atactggaagaaaagctcgatggagagaggatgcagctacacaaacgcggaaatgagttc
ttctattgctctcggaaaggcaaagattatacttacctgtatgggaaacatgttgcagca
ggtagtcttactccgcacattgctggagcattcgacccacgggttgaggatatcatcctc
gacggtgagatgttggtctgggatcccgtatcggaacgtaacctgcccttcggaactttg
aagactgccgctctgaataaatccaaggaacgactcaaccctcgcccatgcttcaaggtc
ttcgatcttctctacctaaacggccaatcccttatcaccaaatccacaaggttccgcaaa
aagaacctccgcgcctgtgtcacgcccatcaaaggccacattgagttcgtagacgagttt
atcattaagacggcgaaggaggtacgggagaagatggaggaggttatgaacgatagaggg
gaaggacttgtcatgaaacatccggattcggagtatgtgttgaatgggaggaacaaggat
tggatcaaggtcaagccagagtatatggataatatgggcgagacagtagatgttcttgtc
atcggtggcaaatacggctctggcagacgtgctggaggcgtctcatccatcctctgcggt
gttctggacgaccgctacaaagaaggagagccgaagtacagcacttttgtgcgtgtaggc
gccgggttctcgtacaccgattatctatggatacgagacaagccttggaaagagtacgac
ccgaacaacccgcctgcgttcttgcaagtagcgaagtcgaaaacgttggaggacaagccg
gagctgtatttagaaccggaacactcgttcatcatcaaggtcaaagccgcagaaatcacc
cctacagatgcataccacataggctacaccatgcgattcccgagggctttgggtatccgc
gacgatcttacagttgcagactgtgttactgctactgcgttgttcgacagtgtgagatct
gaacggaagcggaagcgggaagaggagatgttggggaaaccgaagaagaagagagtgaaa
gtggcgaagaagccgttgatcttgcaggaatacaaaggatcaactgatctgaaggacgtg
caagtcgagtctgatttattcgagggaatggctttcgccgtcgtctcggatcccaagtcg
aggacgcaggacgaggacaagaagaacatcctcaagctgattcgcgcaaacggtggcaag
atcgtacaagtcgcgaaaaatcagccgggccttctggtcgtttatgatggtacaacgacg
ccatacgatatcaaagcgatcatgaagaaagacttccacgatatcatacgctcgaagtgg
attcacgaatgtatcgcggcgggatcgaggtatagcgtccctctaactaagaagtatttc
ttccacgccacctccattcgacaagagcagcccggattcgacgaagacgcagctgggagt
gaaacggaacccgaagacgatgacgacgaaaggccttctgtttctgtcacccctgcccct
gcatctacgttgggaaaagagcagactcaagacgcggatgaggacaagacggaagacgag
gacgaagaggagacggacccttggtttgttattaagccggagaactcgcagcgtgctagt
gtgggggatgagggtgatgagggtgaggggacggatccggagtcggaaggggacgatgtt
gttgatgacattgcggatggtgataggactgaagatgaggatgagaatgggggcgtgggt
tgggggggtgaggatggggataggactgaagacgaggatggggatgagtgggtgaatctg
tctgcgaaagagggggatgagaagggcaaaggaaagatggaggcgagggatggtcttgtc
gaacatgaagacgacccaaaggccgaagacgtgaagatgggcgaggacgactcggcgatg
gaatacgacacggagcgaatattcacgcatctccgcttctacctcgacacacacgccaac
gcgcgtaaacacaacctatccgtgcccgtcgcccaatccaaaaacgaagacatcatctcg
cagagcttcgacaaactctcgaaattgatcaccgacaacggaggccgaatcagcacggac
atcgacgatccgaaactgacgcatgtgctcgtcgataagcgggatacgagtcggcggagg
gagatcggtgcgcggacggcgaagccgaaacgaaggaacgtcgtgctgtcgagttttatc
gaggattgtctggaggaagagacgttgttggatgaggcgggttatatgccttga
DBGET
integrated database retrieval system
