Stereum hirsutum: STEHIDRAFT_63981
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Entry
STEHIDRAFT_63981 CDS
T03127
Name
(RefSeq) TPR-like protein
KO
K12600
superkiller protein 3
Organism
shs
Stereum hirsutum
Pathway
shs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STEHIDRAFT_63981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_63981
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
STEHIDRAFT_63981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_17
TPR_19
TPR_2
TPR_1
TPR_8
TPR_16
TPR_14
TPR_11
TPR_12
TPR_9
TPR_22
ANAPC3
TPR_6
TPR_20
Methyltransf_11
Methyltransf_25
Alkyl_sulf_dimr
Motif
Other DBs
NCBI-GeneID:
18806098
NCBI-ProteinID:
XP_007307802
JGI:
Stehi1_63981
LinkDB
All DBs
Position
Unknown
AA seq
1326 aa
AA seq
DB search
MSSAFIKTKLKASREAIGKKDWQAAQDASLQVLEYEPDNYHAKMFLGKSLEELGEVARSE
QTYREAIKANPKQPLAWQGLSKLYEKSERWDEYAETLMSLTKLLASMNDATKCAEAVQRL
IELRRERGSPQQLVDTLTVLLPSSPLYSTLSNLPPPDATNPTATTTFATQSAIQNSLPII
DEIVAITEKEEAQKIEKEVAGRRTRLGAAGPEKIRKEVTREVLGTSKLPEYYDEILNHPN
TPDSLRRDTESKLLRQKQQLLFALPSAVSAKKRLAKEVEELAEGMVLLKIPDELAWSLVV
EGRDSETIEGYDFGTLKEYIRLFPTSQLTNMIRGYIAYMDLPTLDPDPKDKDIDEEIELA
VIEDQSAAFDLMLATFTGLQSSILAHRMLSEVYLWDMDYPNAISVAEVGLELVRRQHQNV
GKDLPLVRKAFNIVLSTSLVHFFPPKHHARALRVIDEVLDLDSSNVPTLMSRGYIYEYAN
QWEQARDVFFKVMELTASEGGDDGDDISEDGLRAREEYAWCDVQLDELEKGAEGLQAVME
MIGDDVEGREENKARCLWRLGKAHWEMGGSNRETAYTYFIKSLKCHPTYAPSFTSLGIYY
SEASNPLDPIRASKCFQKAFELDAREAEAARRLAEGFAEEREWDLVEVVARRVIEGEGGL
EGGDPSSSSGAAAEGAAAARYLPTNAWAWKAVGVVELSRQNYGPAITSFQVALRANPEDQ
LSWLRLGEAYLKAGRHVAALKALERSQSLSPPSSTDDWITTYFIGDTYRQMSQFDLATSS
FLSILKSRPDEPGVLISLAQTYIGLGLEEKAGGFLSRAEASFRSAVEVGLRFLGDGEGAG
ASGVKSLGWKVLGNALFYLSRFSEFGEDEVLRPLLEEVSTLVGGTDTGGRLEGIVDLPLQ
IPGEEESLKGINTLMAAILAYNHRIALGLLNSTAVGSAWYDLGSALRSFATEVIVEEKKE
KAERQTTACLMEAIKANPIDETYWIALGNIHFVKQPKTAQHAYIKALEINNKNPEIWTNL
GLLYMQYDDLELANEALYKAQTLDPDFTMAWVGQGLLASRNGHHATSTSLFEHAVSLTSG
VVCISLFCPLRTTLSQSLISDFSFMQPEADIEFAKREFSRASSSTPSELFPAFFILSRYC
KQRPSDASALHLYALVCERLGHLSRAVELLGQTISILEAAYEESEDPVIERRFVVAHVNL
ARARLAVGDWEGAMEGYLTAFGLLPEPEPEVEGVEQNGHEDGQTAVLRTQCQFGSGMASY
KMDQFQEALEFLEGALASAGGDIRMRGHVVVMLSQVLWSLGTEEGRESAKAQLLEWYAPH
FNFQSR
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgccttcatcaagaccaagttgaaggcttcgcgggaggccataggaaagaag
gattggcaagccgcccaagatgccagtcttcaggttctcgagtatgaaccggacaattac
catgcgaaaatgtttctcggaaagtcgttggaagagcttggagaggtggctaggagcgag
caaacataccgcgaagcaatcaaagcaaatccgaaacaaccactagcctggcagggcttg
tcaaagctttacgagaaatctgaaagatgggatgaatatgcggagacgctgatgagtctc
acaaaattgttagcgagcatgaacgacgccacgaaatgtgcagaggctgtacagcgattg
attgagcttcgtcgtgaacgaggctcaccacagcagctcgtcgataccctaacagtcctc
ctcccctcatcccccctctactcaacattatcgaaccttccaccaccggatgccaccaat
cctactgcaaccacgactttcgccacccagagcgctatacaaaactctctgcccatcatc
gatgaaatagtcgcaatcaccgagaaggaggaggcacagaagattgagaaagaggtagca
ggacgaagaacgagattgggagccgcggggccagaaaagatcagaaaggaagtaactagg
gaggtgttagggacttcgaagctccccgaatactacgacgagatcctcaatcacccaaac
acacctgactcactgcgccgagatacggagtccaagctgctccgacagaaacagcaactc
cttttcgctctgccttcggctgtttctgccaagaaaagactggccaaggaggtcgaagag
ttggcggaagggatggtcttgttgaagattccggatgagctagcctggagtttagtcgtc
gaggggagggactctgagacgatcgagggctacgacttcgggacgctgaaggagtacata
cgtctctttcctacctcccaactgacgaatatgatccgtggctatatcgcgtacatggac
ctacctactctcgacccggaccccaaagacaaagacatcgacgaagagattgagcttgcc
gtcattgaagatcaatcagctgcgttcgatttgatgctagcgactttcacgggccttcaa
tcatccatcctcgctcaccgcatgctatcggaagtttatctttgggatatggactacccg
aatgcgatctcagttgccgaggtcggcttagagctcgttcgtagacagcatcaaaatgtc
gggaaagaccttcctctcgttcgcaaagccttcaatattgtcctttccacctctctagtt
cacttcttcccgccaaaacaccatgcacgcgccctccgtgtaatcgacgaagtcctcgac
cttgactcatccaatgtccctaccctcatgtcgcgcggctacatctatgaatatgcgaac
caatgggagcaggcacgcgatgtcttctttaaggtcatggagctcactgcttctgagggt
ggggatgacggggatgatatcagcgaggatggtctgagagcaagggaagagtatgcgtgg
tgtgatgtgcagctagacgagctggagaagggggctgagggtttacaagccgttatggag
atgattggagatgatgtggaggggagagaagagaacaaggctaggtgtctgtggaggcta
gggaaggcacattgggagatgggtggctcgaatcgcgaaaccgcttacacctacttcata
aagtccctgaaatgtcatcccacctatgcgccatctttcacttctcttggtatctactac
tccgaagcttccaatcctcttgacccaattcgcgcgtcaaagtgtttccagaaggcattt
gagttggacgcgagagaggcggaagcagcgaggagactggcagagggttttgcggaggag
agggagtgggatttagtcgaagtggtggcgaggagagtcatcgaaggcgagggcggtttg
gagggaggagatccaagttcgagctcaggtgcagcggcggaaggtgcagctgcagcgaga
tatctgcccacaaatgcatgggcttggaaagccgttggtgtggtagaattgagtcgtcaa
aactatgggccagctattacctcattccaagtcgcccttcgagcaaacccagaggaccaa
ctctcctggctacgtctcggtgaagcatacctcaaagccggccgtcacgtcgcggccctc
aaggccctcgagcgatctcagtcactctcgccaccatcttcaacagacgactggataacg
acctacttcatcggtgacacatatcgccaaatgtcccagttcgacctcgccacgtcttca
ttcctcagcatactcaagtctcgccctgatgaaccgggcgtgctcatttcattggcgcaa
acgtatatcggactaggcttggaggagaaagcaggcgggtttttgagcagggcagaagcc
agttttcggagtgctgtggaagttggcctcaggttcctcggtgatggcgaaggagccggc
gccagtggggtcaagagtttgggatggaaagtcctaggcaacgcgttgttctatctatca
aggttttcggagtttggagaggacgaggtattgaggccgctattggaagaggtgtcgact
ctggttggtggtacggacacgggcggaaggttggaggggatcgtcgaccttccgttgcag
attccaggcgaggaagaatcgctcaagggcatcaatactctgatggcggcaattctggcg
tacaatcatcgcattgcgcttgggttactaaattcgacggcggtgggaagtgcgtggtat
gatttgggctcggccttaaggtcgttcgcaacggaggtgatcgtggaggagaagaaggag
aaagcagagagacagacaacggcttgcttgatggaggctatcaaggcgaacccgatcgac
gagacgtattggatcgcattgggtaatatccattttgtgaagcaaccaaagaccgctcag
catgcgtatatcaaagcgttggagatcaacaacaagaatcctgagatatggaccaatctt
gggctgttgtacatgcaatacgacgatctggagctcgccaacgaagcgctgtacaaagct
cagactcttgatcccgatttcacgatggcatgggtcggacaggggctgttggcctctaga
aatggccatcatgctacttcgacgtcattattcgagcatgcagtcagtttaacttcagga
gttgtatgtatctctcttttctgcccccttcgcaccaccctttctcagtcactaatctct
gacttttcgttcatgcagcctgaagcagacatcgaattcgccaaacgagaattttcacgc
gcctcgtcatctaccccttccgagctcttcccagcgttcttcatcctctctcgctattgc
aaacaacgtccctccgatgcctcggctcttcacctctatgctctcgtttgcgaacgactg
ggtcatctctctcgtgccgtcgaactccttggtcaaaccatctcgatactagaggcggca
tacgaggagagtgaggatccggttatcgagaggagatttgttgttgctcatgtgaattta
gcgagggccaggctcgcggtgggtgattgggaaggcgcgatggagggatatctgactgca
ttcggattgttacctgagcccgagcccgaagttgaaggggtggaacagaatgggcatgag
gatgggcaaaccgcagtgttgaggacgcaatgtcagtttgggtccggtatggcttcatat
aagatggaccaattccaagaggctctggagttcttagagggcgcgcttgcctctgcgggt
ggagatataaggatgaggggacatgttgtggtgatgttgtcacaggtgttgtggtcattg
ggtacggaagagggaagggagagcgcgaaggcgcagctgctagaatggtatgccccccat
ttcaactttcagtcgcggtag
DBGET
integrated database retrieval system
