Sphingobacterium sp. ML3W: KO02_01915
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Entry
KO02_01915 CDS
T03258
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sht
Sphingobacterium sp. ML3W
Pathway
sht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KO02_01915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sht03400
]
KO02_01915
Enzymes [BR:
sht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KO02_01915
DNA repair and recombination proteins [BR:
sht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KO02_01915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SUB1_ProdP9
Motif
Other DBs
NCBI-ProteinID:
AIM35558
UniProt:
A0A088ETX0
LinkDB
All DBs
Position
complement(403578..406913)
Genome browser
AA seq
1111 aa
AA seq
DB search
MGIKEIIEKYGQSELTQTLTKAIQAKNPKVQLKGLIGSSDAVIAVASYTLQERPYLFILP
THEDASYFLSDLESLLDKQVLFFPTSYRKPFDFTQLDATHVLQRAETLNVLNHASELPKM
VVTYPEAIAEKVINRSDLEKNTLEITENTKLSIDFINEFLFEYEFDRVDFVYEPGQYAIR
GGIVDIFSFSNDLPYRIEFFGDDIESIRTFEIESQLSVSKIHKVTIVPNVQAKFLTAQNI
SLLEYIDRDAVVWIKDVQFTLDTIKDGNRKATEFWNALTEKEKKDNSEWINPAYGFSDEK
NFNALLFDFPIIEFGKQFFYKPDTTIKFDIHPQPSFNKDFNLLIHNFKENEKNKIENLIF
SDSPKQIERIYKILEDLDKTVTFIPIHKGFREGFRDDDVKLACYTDHQIFDRYYKYKRKK
GYEKSQAITLKDLRDLKPGDYITHIDHGVGKYAGLEKIEVNGKSQEMIRLSYADNDLLYV
NINSLNRISKYSGKEGSIPKMNKLGTDVWDKLKKTTKKKVKDIARDLIMLYAKRKAQTGT
AFSPDSYLQNELEASFMYEDTPDQEKATADVKRDMESPHPMDRLICGDVGFGKTEIAIRA
AFKAVADSKQVAILVPTTILAHQHFRTFNERLKDLPCTIDYINRFKTAKQIKETLAKLAE
GKIDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSVKEKLKLLRANVDSLTLTATPIPR
TLHFSLMGARDLSLINTPPPNRQPVQTELHVFNETLIQEAVSFELERAGQVFFIHNRVAD
LKQLGAMIQKLVPNARVGIAHGQLEGDDLEDVMLKFINHDFDVLVATTIIEAGLDIPNAN
TIIINHAHMFGLSDLHQMRGRVGRSNKKSFCYLLSPPLSTLTSEAYKRLSAIEEFSELGA
GFNVAMRDLDIRGSGNLLGGEQSGFIAEIGFEMYHKILDEAIQELKEDEFSEVFADDKDH
KYVSFTQIDTDMEVLIPDEYVTNISERYNLYTEISKLENEEQLTDFAVSLEDRFGPVPHE
VFELFNTLRLQWFGKQIGFEKISYKKNTLKGYFVNNPKSSYFESDQFGKVLSFVQQHPEI
SNLKEIKKQLRLALSNVNSIGYALKLLKEMV
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgggaattaaagaaattatagaaaaatacggtcaaagtgagttaacacaaactttgaca
aaagcgatacaagctaaaaatccaaaggtccaattaaaaggtcttatcggttcatctgat
gccgtcattgctgtagcgagttataccttacaagaacgaccttatctctttatcctacca
acacatgaagatgcatcctatttcctaagtgatctcgaaagcctccttgataaacaagtt
ttatttttcccgacctcctaccgtaagccttttgattttacccagctggatgcaacccac
gttttacaacgtgcagaaacgttaaacgtgttaaaccacgcatccgagttgccaaaaatg
gtcgttacatatccggaagcgattgcggaaaaagtcattaatagaagtgatctcgaaaaa
aacaccttagagataacggaaaacacaaaattaagtatagactttatcaatgagttttta
tttgaatacgaattcgaccgcgtagattttgtttacgaaccagggcaatatgccatcaga
ggtggaattgtagatatattctccttctctaatgacctaccatatcggatagaatttttt
ggtgacgacattgaaagtattcgaacatttgaaattgaatctcaattatctgtatcaaaa
atccataaagtaacaattgttcccaacgtacaagctaaatttttaaccgcacaaaacatc
tccctattggagtatattgacagggatgctgttgtttggataaaggatgtacagtttaca
ttggataccataaaagatggaaatagaaaagcaacagaattttggaatgctttaacagaa
aaagaaaagaaagacaattcagagtggataaatcctgcatatggattttctgatgaaaag
aatttcaatgctttactttttgattttccaattatcgaattcgggaaacaattcttttat
aagcccgataccacaatcaaatttgatatccatccacaaccttcattcaataaagatttt
aacctgttaatccataatttcaaagagaatgagaaaaataaaattgaaaatttaatcttt
tcagattctcccaaacagattgaaagaatatacaaaatcttagaagacctcgacaaaaca
gtcacttttatcccgatacacaaagggttcagggaaggttttcgcgacgatgacgtcaaa
ttagcatgctatacggatcatcaaatttttgatcgatactataaatacaaaagaaaaaaa
ggctatgaaaaaagccaagcgattactttaaaagacctacgcgatctcaaacctggtgac
tacatcacccatatcgatcatggtgtaggaaaatatgcgggacttgaaaaaatagaagtc
aacggaaaatctcaggaaatgattcgattgagttatgccgacaacgacctcctttatgtc
aacatcaactcgctaaatcgaatatctaaatactccggtaaagaaggatctatcccaaaa
atgaacaaattgggtaccgatgtttgggacaagctgaagaaaacaacaaaaaagaaagtt
aaagatattgcccgagatttgatcatgctctatgccaaacgtaaagcacagacgggtaca
gcttttagtccagatagctatcttcaaaatgaattggaggcatcctttatgtatgaagat
actccagatcaggaaaaagctacagcagatgttaaacgcgatatggaatcgccacaccca
atggatcggttgatctgtggtgatgtcggatttggaaaaacagaaattgctattcgcgca
gcatttaaagctgtcgcagacagtaaacaagtagccattttagtccccacaaccattctt
gcacatcaacattttagaacttttaacgaacgtcttaaagatttaccctgtaccattgat
tacatcaataggtttaaaacagcaaaacaaattaaagaaacactagccaaattggccgaa
ggtaaaatcgatattatcattggtacgcatcgtttggtcagtaaggatgttaaattcaaa
gatctgggattaatgatcattgatgaagaacaaaaatttggtgtctctgtcaaagaaaaa
ttaaaattattacgtgccaatgtcgattcactgacattgaccgctacaccaattcccaga
accttacatttctcgctcatgggagcaagagatttaagtctcataaacacgccgccaccc
aatcgtcaacccgtacaaacagaattacatgtattcaatgaaacattgatacaagaggcg
gtgtcatttgaactggaacgtgcaggtcaagtattctttatccataatcgtgttgccgat
ttaaaacaattaggcgctatgattcagaaactagtccctaacgcacgagtaggtatcgct
cacggtcaattagaaggtgatgatctggaagatgtcatgcttaaatttatcaatcatgat
tttgatgtattggttgccacaaccatcattgaagctggtctagatattcccaatgccaac
accatcatcatcaatcatgcacatatgttcggtctgagcgatcttcaccaaatgcgtgga
cgtgtgggacgttccaataaaaaatcgttctgttatctgttaagccctcccctatccaca
cttacttctgaagcctataaacgactttctgcaatagaggagttttcagaattgggagca
ggatttaacgtcgctatgcgcgatctagatattcgcggttctggtaacttattaggcggt
gagcaatctggatttattgctgaaattggttttgaaatgtatcataagattcttgatgaa
gctatccaagagttaaaagaagatgagttctcagaagtttttgccgatgacaaagaccac
aagtacgtttcatttacacagatcgacaccgatatggaagtattgatcccagatgaatat
gtaaccaatatcagtgaacgttataatttatacacagaaatatcgaaacttgagaatgaa
gaacaactgactgattttgcagtatcattagaagaccgattcggccctgtaccacatgaa
gtctttgaattatttaatacattacgcttacaatggttcggaaagcagattggatttgag
aaaatatcctacaagaagaacaccttaaaaggttattttgtcaacaatccaaaatcatct
tactttgagtcagatcaatttggaaaggtgctgtcatttgtccaacaacacccagaaatt
agcaatctgaaagaaattaaaaaacagttaagattagctttaagcaatgtcaatagtatt
ggctatgccttaaagcttttaaaagaaatggtttaa
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