Stella humosa: STHU_27580
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Entry
STHU_27580 CDS
T06078
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shum
Stella humosa
Pathway
shum03410
Base excision repair
shum03430
Mismatch repair
shum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STHU_27580
03430 Mismatch repair
STHU_27580
03440 Homologous recombination
STHU_27580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shum03400
]
STHU_27580
DNA repair and recombination proteins [BR:
shum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
STHU_27580
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
STHU_27580
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STHU_27580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHHA1
DHH
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
BBK32124
LinkDB
All DBs
Position
complement(2908323..2910107)
Genome browser
AA seq
594 aa
AA seq
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MDGATPLPAPTILGVERSFTGRRWRSRLADDRPAYALADRFGLPEVVARVLTARGVGPDE
AERFLAPTLRDHLPDPSHLLGMDVAADRLAAAIRSGEAIAIFGDYDVDGATSSALLVRFL
RAAGGRVRAYIPDRMTEGYGPNTPALLRLRQEGAGVVVTVDCGTTAFAPLAAARQAGLDV
IVIDHHVAEPALPDAVAVVNPNRLDQVSQHRGLAAVGVCFLLAVALNRTLRAAGWWRDRP
EPDLLSLLDLVALGTVCDVMPLTGLNRALVAQGLKVMARRANVGIAALADVARLDQKPQA
FHLGYLLGPRVNAGGRVGRADLGTRLLSTEDPAEAAAIAVELDRFNEERRRIEGEVLVAA
MAMVEQGGMPAVLTVGDAGWHPGVIGIVASRLKDRFNRPAMVLAVADGIAKGSGRSIPGF
DLGAAVIAARQAGILTQGGGHAMAAGFTLPAGAIPEFGAFLCDRFGACGIATGRVAELGV
DGSLALSALDTALVARLDGLGPFGAGMSEPRFALAHVKVVRADLAGQNHVRLILGSAAGE
RVKGIAFRAMDSELGPSLIAARGRTVHVAGHLSIDNWNGGDTVQIRIDDAAPAA
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgccacgcccctgccggcgcccaccatcctgggggtggagcggtcgttcacc
ggccggcgctggcgctcccgcctggccgacgaccgccccgcctatgcgctggccgaccgc
ttcggcctgccggaggtggtggcccgcgtgctgaccgcgcgcggcgtcggcccggacgag
gccgagcgcttcctggcgccgacgctccgcgaccacttgccggacccgagccacctgctg
ggcatggacgtggcggccgaccggctggccgcagccatccggtcgggcgaggccatcgcc
atcttcggcgactatgatgtcgacggcgccacctccagcgcgctgctggtgcgcttcctg
cgcgcggccggtggccgcgtgcgcgcctacatccccgaccgcatgaccgagggctatggc
cccaacacgccggccttgctgcgcctgcgccaggaaggggcgggggtggtggtcacggtc
gattgcggcaccacggccttcgcgccgctggcggccgcccgccaggcggggctcgacgtc
atcgtcatcgaccatcacgtcgccgagccggcgctgccggacgcggtcgccgtggtcaat
cccaaccgcctcgaccaggtgagccagcatcgcggcctggcggccgtcggcgtctgcttc
ctcctggcggtcgcgctgaaccggacgctgcgcgcggctggctggtggcgcgaccggccg
gagccggacctgctgtcgctgctcgacctggtggcgctgggcaccgtctgcgacgtgatg
ccgttgacggggctgaaccgcgcgctggtcgcccaggggctgaaggtgatggccaggcgc
gccaatgtgggcatcgccgccctggccgatgtcgcgcggctggaccagaagccgcaggcg
ttccacctgggctatctcctgggcccgcgggtcaatgccggcggccgggtgggtcgcgcc
gacctcggcacccgcctgctgtcgaccgaggacccggccgaggccgccgccatcgcggtc
gagctcgaccgcttcaacgaggagcggcggcggatcgagggcgaggttctggtcgccgcc
atggcgatggtggagcagggcggcatgccggccgtgctgaccgtgggcgatgccggctgg
caccccggcgtcatcggcatcgtcgccagccggctgaaggaccgcttcaaccgcccggcc
atggtgctggcggtggccgacggcatcgccaagggctcgggccgctcgatccccggcttc
gacctgggtgcggccgtgatcgccgcgcggcaggcgggcatcctgacgcaaggcggcggg
catgccatggcggcgggcttcaccctgccggccggcgccatcccggaattcggcgccttc
ctctgcgatcgcttcggcgcctgcggcatcgccacggggcgggtggccgaactgggggtg
gatggcagccttgccctgtcggcgctcgacaccgccctggtcgcgcgcctggacgggctg
gggccgttcggtgcgggcatgtccgagccgcgcttcgcgctggcccatgtgaaggtcgtc
cgcgccgacctggccgggcagaaccatgtccgcctgatcctggggtcggctgccggcgag
cgggtgaagggcatcgccttccgggcgatggacagcgagctgggcccgtcgctgatcgcc
gcccgcggtcgcacagtgcatgttgcgggccacctgtcgatcgacaactggaacggcggc
gacaccgtccagatccgcatcgacgacgcggcaccggccgcctga
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