Stella humosa: STHU_33090
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Entry
STHU_33090 CDS
T06078
Symbol
mfd_2
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shum
Stella humosa
Pathway
shum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STHU_33090 (mfd_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shum03400
]
STHU_33090 (mfd_2)
Enzymes [BR:
shum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STHU_33090 (mfd_2)
DNA repair and recombination proteins [BR:
shum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STHU_33090 (mfd_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
UB2H
SecA_DEAD
RecG_dom3_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BBK32675
LinkDB
All DBs
Position
complement(3492132..3495362)
Genome browser
AA seq
1076 aa
AA seq
DB search
MITAAAEGAGPLIHVVASQARARALHRLVRAFHPDLRVGFLPEWDVRPYGGQAPSPAVMG
QRMGLLRWLIDRDRPPQLVLTTAPALLRRVPPLSVWEGARFEFRTGERIEPEAMAVELQR
IGYFQDGRVDVPGEFAIRGRVVDLFPAAAAMPCRIAHENGRIVSIRSYDPRTQRSLVDTD
SLLVDPASETMPATGEPGEAAMVAAYERLADLFEYAPGARLSIAPDAVEEGPRFLEQVAA
AYAAAGSDACPPERLFLSSNDWNGAVADRSIAMPRLPDWQPVPRFAEQAGAARRLSTFLS
QLPDTCRVVVATPADALSPPLSRALEEATPTKPLPAAWPAVADAAPGSVLAVPLPVDRGF
LLPEAGIAVLAAADILGSRAMLRPVGGRADLPGGVEGFAVGDLLLHLDHGLGRLDGIDRA
EWSPGRHREAIRLRYAGRATMIVPVSELGAVWRYGGDGEAVGLHRLGGEEWARQKAELEA
DVARTARRLVALVAERRRRRAPRLVADDGAYERFAGRFPFPLSPDQMEAIEAVRDDLAAG
RPMDRIVCGDVGFGKTEVALRAAAIAVLAGHQVAVVAPTSILARQHWRTFEKRFRPMGVA
AAYLSGDASADEGAAIRARLLDGTLPLVIGTHALAAGDIRLKPGSLVVIDEEHRFGADDK
LRLRRLAKGCHTLTLTATPIPRTLQATLVGLQELSVVSTPPVARRPVRTVVAPFADALVV
DALRQEHRRGGQSYLVCPRIADIPAIEARIGALLPELELQVLHGRLPRAEMDARMAAFAE
GDGDLLIATNIIESGLDVPNANTILVWRADRFGLAQLHQLRGRVGRGEREGVACLLTDPA
RPPGEATARRLAAMQAADHLGAGFEVSRLDLDQRGAGDLLGEDQSGHMALVGAEFYRYLL
DRALRTARGEAVEAPWTPELLVDLGDGIPEDYVPEPDIRIALYAAAAKLDGEDAIDRFAG
ELVDRFGPLPPPVAGLITFCRLRTLCQQAGIARLVAGPKAVVLHLRPDGRAEGAAKLPRG
WLRQDDRLVLRWPRELAAEAIGPAAADAAARLLRGLRASARRRPRPATPPPEAAAA
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
ttgatcacggcggcagccgagggcgccggccccctcatccatgtcgtcgccagccaggca
cgggcccgcgcgctgcaccgcttggtccgcgcctttcaccccgacctgcgggtggggttc
ctcccggaatgggacgtgcgtccgtatggcggccaggcgccgtcgccggccgtcatgggc
cagcgcatggggctgctgcgctggctgatcgatcgcgaccgcccgccgcaactggtgctg
acgaccgcgccggccctgctgcgccgcgtgccgcccttgtccgtctgggaaggtgcccgg
ttcgagttccggacgggggagcgcatcgagcccgaggcgatggcggtggaactgcagcgg
atcggctatttccaggacggccgggtcgacgtcccgggcgagttcgcgatccgcgggcgg
gtggtcgacctgtttccggccgccgctgccatgccctgccgcatcgcccacgagaacggc
cggatcgtgtcgatccgctcgtatgatccacgcacgcagcgatcgctggtcgacaccgac
agcttgctggtcgacccggcgtcggaaaccatgccggccaccggggagccgggggaggcg
gcgatggtggccgcctacgagcggctggccgacctgttcgagtatgcgcccggcgcccgg
ctgtcgatcgcgcccgatgcggtcgaggaggggccccgcttcctggagcaggtggcggcg
gcctatgccgcggccggctcggacgcctgcccgccggaacggctgttcctgtcttccaac
gactggaatggggcggtggcggaccgctccatcgccatgccgcgattgccggactggcag
ccggtgccgcgctttgccgaacaggcgggggctgcgcgcaggctgtcgactttcctttcc
cagctacccgacacctgccgggtcgtcgtggcgacgccggccgatgccctgtcgcccccc
ttgtcgcgggccttggaggaagccactcccaccaagccgctgccggccgcctggccggcg
gtggccgatgccgcgccaggcagcgtcctggccgtgccgctgccggtcgatcgcggcttc
cttctgccggaggccggaattgcggtgctggccgccgccgacatcctgggcagccgggcg
atgctgcgcccggtcggtggccgtgcggatctgccaggcggtgtcgaggggtttgcggtc
ggcgacctgttgctgcatctcgaccacgggctggggcggctcgacgggatcgaccgggcg
gagtggtcgcccggccgccaccgcgaggccatccggctgcgctatgccgggcgggcgacg
atgatcgtgccggtgtccgaactgggcgcggtctggcgctatggcggcgatggcgaggcg
gtcggcctgcaccggctgggcggcgaggaatgggcgcggcagaaggcggagttggaggcc
gacgtcgcccgcaccgcccggcggctggtggcgctggtggccgagcgccgccgccgccgt
gctccgcgcttggtggccgacgatggtgcctatgagcgcttcgccgggcgctttccgttt
ccgctcagccctgaccagatggaggcgatcgaggcggtccgcgacgacctcgccgccggc
cggccgatggaccgcatcgtctgcggcgatgtcggcttcggcaagaccgaggtggcgctg
cgcgccgctgccatcgccgtgctggccggccaccaggtcgcggtggtggcgccgacctcg
atcctcgcgcgccagcactggcgcacgttcgagaaacgcttccggccgatgggtgtcgcg
gccgcctatctgtcgggcgatgcctctgccgacgagggggcggcgattcgtgccaggctc
ctggacggaaccctgccgctcgtgatcggtacccacgccctggcagcgggcgacatccgc
ctgaagccgggcagcctggtggtgatcgacgaggagcatcgcttcggcgccgacgacaag
ctgcggctccggcggctggccaaggggtgccacaccctgacactgacggcgacgccgatc
ccgcggacgctgcaggcgacgctggtcggcctgcaggagttgagcgtcgtgtcgacgccg
ccggtcgctcggcggccggtgcgcacggtggtggcgccctttgccgacgcgctcgtcgtc
gatgccctgcggcaggaacaccgccgtggcggccagagctacctggtatgcccgcgtatc
gccgacattccggcgatcgaggcgcggatcggcgcgctgctgccggagctggaattgcag
gtgctgcacggtcggttgccgagggccgagatggatgcgcgcatggccgccttcgccgag
ggcgacggcgacttgctgatcgccaccaacatcatcgagagcgggctcgacgtgcccaac
gccaacaccatcctggtgtggcgggcggaccggttcgggctggcccagctccaccagctt
cgcggccgggtgggccgcggcgagcgcgagggcgtggcctgcctcctgaccgacccggcg
cgcccgccgggcgaggccactgctcggcgactggccgcgatgcaggcggccgaccatctg
ggcgcaggcttcgaggtgagccggctcgatctcgaccagcgcggggcgggcgacctgctg
ggcgaggaccagagcggccacatggccctggtcggggcagaattctatcgctacctgctc
gatcgtgccttgcggacggcgcgcggcgaggcggtcgaggcgccgtggacgcccgagctg
ctggtcgatctgggcgacggcatccccgaagactatgtgccggagccggacatccgcatc
gcgctctatgccgctgctgccaagctcgatggcgaggacgccatcgaccgcttcgcgggg
gaactggtcgaccgcttcggcccgctaccgccgccggttgccggcttgatcacgttctgc
cgcctgcgcaccctctgccagcaggcaggcatcgcccgcctggtcgcggggccgaaggcg
gtcgtgctgcacctgcggccggacggccgggcggagggcgcggccaagctgccgcgcgga
tggctgcgccaggacgatcggctggtattgcgctggccgcgcgaactggctgccgaagcc
atcgggccggcggccgcggatgcggcggcccggctgctgcgcgggcttcgcgcgtcggcg
cggcgacgcccgcgcccggctacaccgccgcccgaagcagcggcggcgtag
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