Stella humosa: STHU_33190
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Entry
STHU_33190 CDS
T06078
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shum
Stella humosa
Pathway
shum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STHU_33190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shum03400
]
STHU_33190
Enzymes [BR:
shum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STHU_33190
DNA repair and recombination proteins [BR:
shum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STHU_33190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBK32685
LinkDB
All DBs
Position
3504385..3506937
Genome browser
AA seq
850 aa
AA seq
DB search
MAALEPYRRKRDFKATSEPKGRKARKAGNSFVIQKHAATRLHYDFRLEMDGVLKSWAVTR
GPSLLPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGSVIVWDRGTWTPVHDSAKGYAKG
HLEFELHGDKLGGRWHLVRMAGKRGEKRENWLLIKGEDDAARPEGAADILEERPESVKTG
RKVEELEGEAPGWSSKTGRIAKPRKAARTVPTEAMAPAEPVERADPAKIKGARKAAMPAF
VEPALATLVAKPPAGARWLHEIKFDGYRLQARIEGGRVKLLTRSGLDWTRRFGKTVVAAL
QALPTGAALIDGELVVETDSGASDFSALQADLSEGRSDRFAFYAFDLLHLDGYDLTSLGL
ARRKEMLRGLVGTEPGLVRFSDHFDASGAMILRHACRLSLEGVVSKLRDAPYRSGRGKSW
VKSKCSARQEFVVGGYVPSTTSRKAIGSLVLGVHEDGELRHVGRVGTGFTAAVAEDLFAK
LQRLKAPASPFAGRLDAEAARGVRYARPELVAEVEFRGWTGEGNLRHAAFRGLREDKPAA
EIVREEAKSAPAPKAPRRTVKLTHPDRVYWPDDGVTKEGLADYYTEVWRHVAPHIVGRPL
ALLRAPEGIAGQSFFQKHAWKGVHSAIDLVADPADAGGQPLIAIHDLDGLIGLVQAGVLE
IHPWGSTLADWEHPDLIVMDLDPGEGVPWEAVIEAATETADRLRKMGLAAFVKTSGGKGL
HVVTPLKPKADWPAVKAFTRGLAEAMAADSPDRFVATITKSKRRGRILIDYLRNQRGMTA
VAPYSTRARPGAAVSMPLAWDELGPGIGPAYFTVANAPTRLATLRSDPWDGFRAAAVPLP
VAKSRRTKGS
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgctcgaaccctatcgccgcaagcgcgacttcaaggcgaccagcgagcccaag
ggccgcaaggcgcgcaaggccggcaacagcttcgtcatccagaagcacgccgccacccgc
ttgcactacgacttccggctggagatggacggcgtgctgaagagctgggccgtcacccgc
ggccccagcctgctgccgggcgagaagcggctggccgtccatgtcgaggaccacccgctg
gagtatggcgacttcgagggcaccatccccaagggcgagtatggcggcggcagcgtcatc
gtctgggaccgcggcacctggacacccgttcacgacagcgccaagggctatgccaagggc
cacctggagttcgagctgcatggcgacaagctgggcggccgctggcacctcgtgcgcatg
gccggcaagcgcggcgagaagcgcgagaactggctgctgatcaagggcgaggatgacgcc
gcgcggcccgaaggggcggccgacatcctggaggaaaggccggaatcggtgaagaccggc
cgcaaggtcgaggagctggaaggcgaggccccgggctggtcatcgaaaaccgggcggatc
gccaagccgcgaaaggctgcgcgaaccgtcccgaccgaggccatggccccggcggagccc
gtcgagcgggccgatccggcgaagatcaagggcgcccgcaaggccgccatgcctgctttc
gtggagcccgcgctggcgaccctggtggccaagccgccggccggcgcgcgctggctgcac
gagatcaagttcgacggctatcgcctgcaggcacggatcgagggcggtcgcgtgaagctg
ctgacgcgcagcgggctcgactggacgcgccggttcggcaagacggtcgtggccgccctg
caggcgctgcccaccggggctgccctgatcgacggcgaactggtcgtcgagacggattcc
ggcgcgtcggacttctctgctctccaggccgacctgagcgaaggccgcagcgaccgcttc
gccttctatgctttcgacctgttgcacctggacggctacgatctgaccagcctgggcctg
gcccgccgcaaggagatgctgcgcggcctggtggggacggagccgggcctggtgcgcttc
agcgaccatttcgacgctagcggcgccatgatcctgcgccatgcctgccgcctcagcctc
gagggggtcgtgtccaagctgcgcgacgcgccctaccggtcgggccgcgggaagagctgg
gtcaagtcgaaatgctcggcgcggcaggagttcgtggtcggcggctatgtcccgtcgacg
acgtcgcgcaaggcgatcggctcgctggtgctgggcgtgcacgaggatggcgagctgcgc
catgtcggccgcgtcggcaccggcttcaccgcggcggtggccgaggacctgttcgcgaag
ttgcagcggctgaaggcaccggccagcccgttcgccgggcgcctggacgcagaggccgcg
cgcggcgtgcgctacgcccggcccgagttggtggccgaggtcgagttccgcggctggacc
ggcgagggcaatctgcgccacgccgccttccgtggcctgcgcgaggacaagcccgcggcc
gagatcgtgcgcgaggaagccaaatcggcgcctgccccgaaggcgccgcgccggacggtg
aagctgacccaccccgaccgcgtctactggcccgacgacggcgtgaccaaggaggggctg
gccgactactacaccgaggtctggcgccatgtggcgccccatatcgtcggccggccgctg
gccctgctgcgggcgccggaggggatcgccggccagtcgttcttccagaagcatgcctgg
aagggcgtccactccgcgatcgacctcgtggccgatccggccgacgcgggcggccagccg
ctgatcgccatccatgacctggacggcctgatcgggctggtgcaggcgggtgtgctggag
atccacccctgggggtcgacgctggccgactgggagcatccggacctgatcgtcatggac
ctcgaccccggcgagggcgtgccgtgggaggccgttatcgaagccgcgaccgagaccgcc
gaccggctgcgaaagatggggcttgccgccttcgtcaagacttccggcggcaagggcctg
catgtcgtcacgccgctgaagcccaaggccgactggccggcggtcaaggccttcacccgt
ggcctggcggaagcgatggcggccgacagcccggaccgcttcgtcgccaccatcaccaag
tccaagcggcgcggccgcatcctcatcgactatctgcgcaaccagcgcgggatgacggca
gtcgccccctactccacccgcgcccggcccggagccgcggtttccatgccgctcgcctgg
gacgaactcggccccggcatcggcccggcctacttcaccgtcgccaacgcgcccacccgg
ctggcgaccctgcgcagcgacccatgggatggcttccgcgccgcggccgtgccgctgccc
gttgccaagtcccgccgcaccaaaggcagttag
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