Streptomyces hundungensis: DWB77_04565
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Entry
DWB77_04565 CDS
T07388
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shun
Streptomyces hundungensis
Pathway
shun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DWB77_04565 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shun03400
]
DWB77_04565 (mfd)
Enzymes [BR:
shun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DWB77_04565 (mfd)
DNA repair and recombination proteins [BR:
shun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DWB77_04565 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
4HBT_3
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AYG82391
UniProt:
A0A387HI80
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All DBs
Position
5091391..5094924
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVRAATDGHRMHLDLVGPPAARPFAIAALARDAGRSVLAVTA
TGREAEDLAAALRSMLPAEEIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLSHPSKDDP
SAGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRTGQSADLNEIVEGLAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRTRAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLIDVLPQGSMAV
VCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVDAASLWGIADVRDRARELNMM
WWSVSPFAADDADLDDETLKLGMHAPEAYRGDIQRALADTKQWLADGWRTVYVTAGHGPA
SRTVEVLGGEGIAARLDAEIDELTPSVVQVTCGAIDFGFVDPALGLAVLTETDLTGQRSA
TKDLGRMPARRRKTIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQNATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIRLYS
ARMAAPGHAFGADTPWQRELEDAFPYTETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYAQFPVVVRALSRFQSDTEAK
ATLEGLKDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIQIAHGQMGESQLEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
EQEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIAAANSEEDVKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLHPRTVIKAAT
RQILVPRPTAGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggatgccgtcgtacgagaccccgcgctcgccgaagcggtg
agggccgccaccgacggccaccggatgcacctcgacctggtcggcccccccgccgcccgc
cccttcgcgatcgccgcgctggcgcgtgacgcgggccgctccgtgctcgcggtgaccgcc
accggccgcgaggccgaggacctggcggccgccctgcgctcgatgctgccggccgaggag
atcgtggagtacccgtcctgggagacgctgccgcacgaacgcctctcgccgcgcagcgac
accgtgggccggcgcctcgccgtgctgcgccggctgtcccaccccagcaaggacgacccg
tccgccgggcccgtgagcgtcgtcgtcgcgcccatccgctccgtactgcaaccgcaggtc
aaggggctcggggatctggagcccgtctcgctgcggaccgggcagtccgcggatctgaac
gagatcgtggaggggctcgccgccgccgcgtacgcccgggtcgaactcgtcgagaagcga
ggggagttcgcggtccggggcgggatcctcgatgtgttcccgcccaccgaggagcacccg
ctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcgttccctggaggtcgccgagcacggactgtgggcgccgccctgccgtgagctgctg
ctcaccgacgaggtgcgcacccgcgcggcggccctcgccgagcagcaccccgagctcggc
gagctcctcggcaagatcgccgaggggatcgcggtggagggcatggagtccctcgcgccg
gtcctcgtcgacgagatggagctgctcatcgacgtgctgccgcagggttcgatggccgtg
gtgtgcgacccggagcgggtgcggacgcgagccgcggacctggtcgccaccagccaggag
ttcctccaggcgtcctgggcggcgagcgcgggcgggggagaggcgcccatcgacgtggac
gcggcctccctgtggggcatcgccgacgtacgcgaccgggcccgtgagctgaacatgatg
tggtggtcggtgtcgccgttcgccgccgatgacgccgacctggatgacgaaaccctcaag
ctgggcatgcacgcccccgaggcctaccgcggtgacatccagcgggcgctcgccgacacc
aagcagtggctggccgacggctggcgcacggtgtatgtgacggccggtcacggcccggcg
tcgcgcaccgtcgaggtgctcggcggcgagggcatcgcggcccggctcgacgcggagatc
gacgagctgaccccttcggtggtccaggtgacgtgcggcgccatcgacttcggcttcgtg
gatcccgcgctggggctcgcggtcctgaccgagaccgacctcaccggccagcgctccgcc
accaaggacctgggccggatgccggcccgccgccgcaagaccatcgacccgctcaccctg
gaggtgggcgactacatcgtgcacgagcagcacggtgtgggccgctacatcgagatggtg
cagcgcaccgtgcagaacgcgacccgcgagtacctgctggtcgagtacgcgcccgccaag
cgcgggcagcccggcgaccggctctacatccccaccgaccagctggagcaggtgaccaag
tacgtcggcggcgaggccccgacgctgcaccggctcggtggcgccgactggaccaagacc
aaggcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctgatccggctctacagc
gcccgcatggcggcgcccggccacgcgttcggcgccgacacgccctggcagcgcgagctg
gaggacgccttcccgtacacggagacccccgatcagctgtccacgatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgtggcgacgtgggctacgga
aagaccgagatcgcggtgcgcgccgcgttcaaggccgtacaggacggcaagcaggtcgcc
gttctggtgccgacgacactcctggtgcagcagcacttcggcaccttcaccgagcgctac
gcccaattcccggtcgtggtgcgggcgttgagccgcttccagagcgacaccgaggcgaag
gcgacccttgagggcttgaaggacgggtcggtcgacctcgtcatcggcacgcaccggctg
ttctcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgt
ttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtcctgacg
atgtccgcgacgcccattccccgtacgctcgaaatggccgtgacgggcattcgcgagatg
tcgacgatcaccaccccgccggaggagcgccaccccgtcctgaccttcgtcgggccgtac
gaggagaagcagatcggcgccgccgtccggcgtgagctgctgcgcgagggtcaggtcttc
tacatccacaaccgggtcgagtccatcgaccgggccgcggcccggctgcgcgagatcgtg
cccgaggcgcgcatccagatcgcgcacgggcagatgggcgagagccagctggagcaggtc
gtcgtcgacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtcgagtcg
ggcatcgacatctccaacgccaacaccctcatcgtggagcgcggcgacaacttcggcctc
tcccagctgcaccagttgcgcggccgggtgggccggggccgcgaccgcggttacgcctac
ttcctgtatccgccggagaagccgctgaccgagacggcgcacgagcggctcgccacgatc
gcccagcacaccgagatgggcgcgggcatgtatgtggcgatgaaggacctggagatccgg
ggcgcgggcaacctcctcggcggcgagcagtcggggcacatcgcgggcgtcggtttcgac
ctgtacgtccgcatggtcggcgaggcggtcgccgactaccgggcgcagatggagggcggc
gagcaggaggaggcgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgcgcctccaggcctatcgggcgatcgccgcggcc
aactccgaggaggacgtcaaggcggtgcgcgaggagctcaccgaccggtacggcaagctg
cccgagccggtcgagaacctgctcctggtcgcgggcctgaggatgctggcccgggcctgc
ggggtcggggagatcgtgctccaggggcccaacatccggttcgctccggtggagttgagg
gagtcgcaggagctgcgtctcaagcgcctgcacccccgtacggtcatcaaggcggccacc
cggcagatcctggtgccgcgcccgaccgcggggaagatcggcggcaagccggtggtcggg
cgggaactgctggcctggacgggtgagttcctcaccacgatcctggggtcctga
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