KEGG   Streptomyces hundungensis: DWB77_04565
Entry
DWB77_04565       CDS       T07388                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
shun  Streptomyces hundungensis
Pathway
shun03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DWB77_04565 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shun03400]
    DWB77_04565 (mfd)
Enzymes [BR:shun01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DWB77_04565 (mfd)
DNA repair and recombination proteins [BR:shun03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      DWB77_04565 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF CarD_TRCF_RID Helicase_C ResIII AAA_22 UB2H 4HBT_3 RecG_dom3_C MFD_D3
Other DBs
NCBI-ProteinID: AYG82391
UniProt: A0A387HI80
LinkDB
Position
5091391..5094924
AA seq 1177 aa
MSLHGLLDAVVRDPALAEAVRAATDGHRMHLDLVGPPAARPFAIAALARDAGRSVLAVTA
TGREAEDLAAALRSMLPAEEIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLSHPSKDDP
SAGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRTGQSADLNEIVEGLAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRTRAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLIDVLPQGSMAV
VCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVDAASLWGIADVRDRARELNMM
WWSVSPFAADDADLDDETLKLGMHAPEAYRGDIQRALADTKQWLADGWRTVYVTAGHGPA
SRTVEVLGGEGIAARLDAEIDELTPSVVQVTCGAIDFGFVDPALGLAVLTETDLTGQRSA
TKDLGRMPARRRKTIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQNATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIRLYS
ARMAAPGHAFGADTPWQRELEDAFPYTETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYAQFPVVVRALSRFQSDTEAK
ATLEGLKDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIQIAHGQMGESQLEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
EQEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIAAANSEEDVKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLHPRTVIKAAT
RQILVPRPTAGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq 3534 nt   +upstreamnt  +downstreamnt
atgagcctgcacggtctgctggatgccgtcgtacgagaccccgcgctcgccgaagcggtg
agggccgccaccgacggccaccggatgcacctcgacctggtcggcccccccgccgcccgc
cccttcgcgatcgccgcgctggcgcgtgacgcgggccgctccgtgctcgcggtgaccgcc
accggccgcgaggccgaggacctggcggccgccctgcgctcgatgctgccggccgaggag
atcgtggagtacccgtcctgggagacgctgccgcacgaacgcctctcgccgcgcagcgac
accgtgggccggcgcctcgccgtgctgcgccggctgtcccaccccagcaaggacgacccg
tccgccgggcccgtgagcgtcgtcgtcgcgcccatccgctccgtactgcaaccgcaggtc
aaggggctcggggatctggagcccgtctcgctgcggaccgggcagtccgcggatctgaac
gagatcgtggaggggctcgccgccgccgcgtacgcccgggtcgaactcgtcgagaagcga
ggggagttcgcggtccggggcgggatcctcgatgtgttcccgcccaccgaggagcacccg
ctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcgttccctggaggtcgccgagcacggactgtgggcgccgccctgccgtgagctgctg
ctcaccgacgaggtgcgcacccgcgcggcggccctcgccgagcagcaccccgagctcggc
gagctcctcggcaagatcgccgaggggatcgcggtggagggcatggagtccctcgcgccg
gtcctcgtcgacgagatggagctgctcatcgacgtgctgccgcagggttcgatggccgtg
gtgtgcgacccggagcgggtgcggacgcgagccgcggacctggtcgccaccagccaggag
ttcctccaggcgtcctgggcggcgagcgcgggcgggggagaggcgcccatcgacgtggac
gcggcctccctgtggggcatcgccgacgtacgcgaccgggcccgtgagctgaacatgatg
tggtggtcggtgtcgccgttcgccgccgatgacgccgacctggatgacgaaaccctcaag
ctgggcatgcacgcccccgaggcctaccgcggtgacatccagcgggcgctcgccgacacc
aagcagtggctggccgacggctggcgcacggtgtatgtgacggccggtcacggcccggcg
tcgcgcaccgtcgaggtgctcggcggcgagggcatcgcggcccggctcgacgcggagatc
gacgagctgaccccttcggtggtccaggtgacgtgcggcgccatcgacttcggcttcgtg
gatcccgcgctggggctcgcggtcctgaccgagaccgacctcaccggccagcgctccgcc
accaaggacctgggccggatgccggcccgccgccgcaagaccatcgacccgctcaccctg
gaggtgggcgactacatcgtgcacgagcagcacggtgtgggccgctacatcgagatggtg
cagcgcaccgtgcagaacgcgacccgcgagtacctgctggtcgagtacgcgcccgccaag
cgcgggcagcccggcgaccggctctacatccccaccgaccagctggagcaggtgaccaag
tacgtcggcggcgaggccccgacgctgcaccggctcggtggcgccgactggaccaagacc
aaggcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctgatccggctctacagc
gcccgcatggcggcgcccggccacgcgttcggcgccgacacgccctggcagcgcgagctg
gaggacgccttcccgtacacggagacccccgatcagctgtccacgatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgtggcgacgtgggctacgga
aagaccgagatcgcggtgcgcgccgcgttcaaggccgtacaggacggcaagcaggtcgcc
gttctggtgccgacgacactcctggtgcagcagcacttcggcaccttcaccgagcgctac
gcccaattcccggtcgtggtgcgggcgttgagccgcttccagagcgacaccgaggcgaag
gcgacccttgagggcttgaaggacgggtcggtcgacctcgtcatcggcacgcaccggctg
ttctcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgt
ttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtcctgacg
atgtccgcgacgcccattccccgtacgctcgaaatggccgtgacgggcattcgcgagatg
tcgacgatcaccaccccgccggaggagcgccaccccgtcctgaccttcgtcgggccgtac
gaggagaagcagatcggcgccgccgtccggcgtgagctgctgcgcgagggtcaggtcttc
tacatccacaaccgggtcgagtccatcgaccgggccgcggcccggctgcgcgagatcgtg
cccgaggcgcgcatccagatcgcgcacgggcagatgggcgagagccagctggagcaggtc
gtcgtcgacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtcgagtcg
ggcatcgacatctccaacgccaacaccctcatcgtggagcgcggcgacaacttcggcctc
tcccagctgcaccagttgcgcggccgggtgggccggggccgcgaccgcggttacgcctac
ttcctgtatccgccggagaagccgctgaccgagacggcgcacgagcggctcgccacgatc
gcccagcacaccgagatgggcgcgggcatgtatgtggcgatgaaggacctggagatccgg
ggcgcgggcaacctcctcggcggcgagcagtcggggcacatcgcgggcgtcggtttcgac
ctgtacgtccgcatggtcggcgaggcggtcgccgactaccgggcgcagatggagggcggc
gagcaggaggaggcgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgcgcctccaggcctatcgggcgatcgccgcggcc
aactccgaggaggacgtcaaggcggtgcgcgaggagctcaccgaccggtacggcaagctg
cccgagccggtcgagaacctgctcctggtcgcgggcctgaggatgctggcccgggcctgc
ggggtcggggagatcgtgctccaggggcccaacatccggttcgctccggtggagttgagg
gagtcgcaggagctgcgtctcaagcgcctgcacccccgtacggtcatcaaggcggccacc
cggcagatcctggtgccgcgcccgaccgcggggaagatcggcggcaagccggtggtcggg
cgggaactgctggcctggacgggtgagttcctcaccacgatcctggggtcctga

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