Salinicoccus halodurans: AAT16_11575
Help
Entry
AAT16_11575 CDS
T03940
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shv
Salinicoccus halodurans
Pathway
shv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAT16_11575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shv03019
]
AAT16_11575
03009 Ribosome biogenesis [BR:
shv03009
]
AAT16_11575
Enzymes [BR:
shv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAT16_11575
Messenger RNA biogenesis [BR:
shv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAT16_11575
Ribosome biogenesis [BR:
shv03009
]
Prokaryotic type
rRNA helicases
AAT16_11575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UTP25
AAA_19
DUF4468
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKG74770
UniProt:
A0A0F7D4T0
LinkDB
All DBs
Position
complement(2262951..2264468)
Genome browser
AA seq
505 aa
AA seq
DB search
MKFFKQLGVSDETLKSLEEMGFETPTPIQEESIPFALERKDILGQAQTGTGKTGAFGIPI
IENTEKQGGTQVLILTPTRELAVQVSEQLKKFAKYKKLGVNVIFGGMSIERQIKDLKRRP
EIIVGTPGRIIDHIKRKTLKLESIRTLVLDEADEMMNMGFIDDVKFIMSGLPEDNRQTLL
FSATMPPAIQELVTRFMNNPQIVKTMSQDASNPQIEEFYTIVKELEKLDVFTSFLDTHQP
DLAIVFGRTKRRVDELTSALIAKGYRAEGLHGDITQSKRLEVLKKFRNNALDILVATDVA
ARGLDISGVSHVYNFDIPQDAESYTHRIGRTGRAGKEGMALTFVNPVEMDYLRMIENEKK
KTILALRPPNKKEVQKAREKEIFEKIQLWISQNDSSHTTDIAKRLLEENESEEVVAALLN
EFFFGKSDDSIQLSFEKPLTRKGGNRRGGKPSGGKKPFRKGRGDQRRSGGGKRNERSGSG
GRQQQKGPRRSNNSQGGRTFKDHMK
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttttaaacaattaggtgtcagtgatgaaaccttaaaatcactggaagaaatg
ggatttgagacaccaactcctattcaggaagagagcataccgtttgctcttgagagaaaa
gatattttaggccaggcgcagactggtactggtaaaactggtgcattcggtatcccgatc
atagaaaacactgagaagcagggcggcacacaagtgctgattctgacaccgacacgtgaa
ttggcagtacaggtgagtgaacaactcaaaaaattcgccaagtataagaaacttggcgta
aacgtaattttcggcgggatgagcattgaacgccagatcaaggacctcaaaagacgtccg
gaaatcatcgtaggtacaccgggtcgtatcatcgaccatatcaaaaggaaaacactgaag
cttgaaagcatcagaaccctggttctggatgaggcggatgaaatgatgaacatgggcttc
atcgatgatgtgaaattcatcatgtccgggcttccggaagacaacaggcagacattgctg
ttctcagctactatgcctccggcaatccaggaactcgttacacgcttcatgaacaatccc
cagattgttaaaacaatgagccaggatgcaagtaaccctcaaattgaagagttctacaca
attgtaaaagaactcgaaaaacttgatgtgttcacgagcttcctcgatactcaccaaccg
gatcttgcaatcgtcttcggccgtacaaaacgccgtgtcgatgaattgacaagtgcattg
attgccaaaggataccgcgcagaaggcctgcatggggatatcacgcagtccaaacgtctt
gaagtgcttaagaagttccgtaataatgcattggacattctcgttgcgacagatgtagct
gcaagaggtctggacatttcaggtgtatcccatgtatacaacttcgacattccacaggat
gccgaaagctatactcatagaatcggccgtacaggccgtgcgggtaaagaaggcatggca
cttacttttgtcaatccggttgagatggactatctcagaatgatcgagaatgagaaaaag
aaaacgattcttgctcttagaccaccgaataaaaaagaagtgcaaaaagcgagagaaaaa
gaaatcttcgagaagatccagctttggatttcccagaatgacagcagtcatactacagat
atcgctaagcgtctgcttgaagagaacgaatctgaagaagtggttgcagcactgctcaat
gaattcttcttcggaaaatcggatgacagcatccagctgtcatttgaaaaaccgttgaca
cgtaaaggcggaaaccgtcgcggaggcaagccttccggtggtaagaaacctttcagaaaa
ggacgcggtgatcagagaaggagcggcggcggtaaacgtaacgaacgaagtggaagcggc
ggccgtcagcagcagaaaggtccgcgccgcagcaacaacagccagggcggacgtactttc
aaagatcacatgaaataa
DBGET
integrated database retrieval system
