Shewanella sp. W3-18-1: Sputw3181_1853
Help
Entry
Sputw3181_1853 CDS
T00453
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sputw3181_1853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_1853
Enzymes [BR:
shw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sputw3181_1853
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sputw3181_1853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABM24688
UniProt:
A0A6N3J4B8
LinkDB
All DBs
Position
complement(2134682..2138170)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTHFSALTPPVVKNGTQMQTLSALGGVCQAVTLASLVRQHPGTTLLVTSDTPSALSLELE
LTYLLGKCDIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQISQTEHSVVIVPVTTLMM
RLPPKAYLSANVFVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG
VNMPLRIELFDDEVETIRHFDPETQRSLHPVESIRLLPAKEFPTDSAAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNQMPAGIENYLPLFFDEVATLFDYLPKETQLVTLGDIEKSARAH
LQEVETRYQDRRVDPLRPLLEPKELYLLIEELFAAFKPLPRYQFISPTTESVETGKATVI
DANQLPDISANHKLKQPLLALQDYAQNAPRMLFSAESEGRREALLELLSKIQLKPALFSH
FDEFIQSDAKLGLIVSPLSRGCLLKLSPKDAVSIICETELFGHRISQQRRREKQRQISND
ALIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSNLHL
ISRYSVGADEDAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEIDEE
EYAQFAQGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNA
GKQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVI
GTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMS
GMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQG
IIDLVPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERA
DTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQ
DLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEIELRI
PALLPEAYVSDVNIRLSLYKRIAGCETQEALDELKVELIDRFGLLPEATKNLMEMTLYKH
QATRLGATKIEVHAKGGSIEFSHDHVIDPGFIIGLLQSQPQIYRMEGPNKLKFSLTAETA
KDRLDVVKLLLEQLSQHRLGDK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactcacttttcagccctaacgccaccagtcgtcaaaaatggtactcaaatgcaaacc
ctatccgcactcggtggtgtttgccaagcggtcacactcgccagcttagtgcgccaacat
ccagggacaacactgcttgtcaccagcgacacgcctagcgccttaagcttagagttagag
ctcacctatttactcggtaaatgtgatatcaaggttcggctattcccagatcgtgagacc
ttaccctatgacagtttctcgccccatcaggatctgatctctcaacgcctagaaacactg
tcacaaatatcccaaaccgaacacagtgtggttatcgtccccgtcaccactttgatgatg
cgcctgccacctaaagcctatttgagcgccaacgtctttgtacttaaaaagggcgataga
tatcaattacacaatgtacgccaacatttaaccgatacaggttaccacttggtggagcaa
gtgtatgaacatggcgagtttgccattcgtggttcgattttggatattttcccgacgggc
gttaatatgccgctgcgcatcgagctattcgatgatgaagttgagaccattcgccatttc
gaccctgaaacccagcgttcgttacatcctgttgagtccattcgtctattaccggccaag
gagtttccgactgacagtgccgccattgaaggatttaggcaacgataccgccgccgtttt
gaagtgatagtcaaagagcctgaatcggtttaccaattagtaagtcgtaatcaaatgccc
gcagggattgaaaattacctgccactgttttttgatgaagtcgccaccctatttgattac
ttacccaaggagactcaacttgtcacccttggggatattgaaaaatccgcccgagcccat
ttgcaggaagtcgaaacccgctaccaagacagacgtgtcgatccactgcggccactgctc
gagcctaaagaactgtatttactgattgaagagctatttgcggcatttaaaccactgccg
cgctatcagtttatttcgcccactaccgagtcggtagagacaggtaaagccacggttatc
gatgctaatcaacttcccgatatcagtgcgaatcacaaattaaagcagccattactcgca
ttacaagattacgcgcaaaatgcaccgcggatgctatttagcgccgagtctgaaggacgg
cgcgaagccctgcttgaactcttaagtaaaatccaacttaaacccgcattattcagccat
tttgatgaatttattcaaagtgatgccaaactggggcttatcgtttcgccactgtcacgc
ggctgtttacttaagctcagtccaaaagatgccgtgagcattatttgtgagacagaactt
tttggtcaccgcatctcccagcagcggcgccgggaaaaacagcgccagatcagcaatgat
gcactgattaaaaacttagccgaactgaaagtcggtcaacccatagtgcacctcgaacac
ggcgtggcgctataccaaggcttagtgaccctagacacgggcggtttagttgccgaatac
ctgcaattagaatacgccggtggcgataaactctatgtacccgtatcgaacttacacctg
atcagccgttacagtgttggtgcagatgaagacgcccatctcaataaacttggcaacgag
acgtgggccaaagccaagaacaaagccatagagaaaatccgcgatgtggcagccgaactg
cttgatgtttacgcccgtcgccaagcgcgtcccggcgaaagttgcgagattgacgaagag
gaatatgcccaatttgcccaagggttcccctttgaagaaaccgtcgatcaagaaagtgct
atccatgccgtattagcagacatgcgttccccaattgccatggacagacttgtatgtggt
gacgtgggctttggtaaaacggaagtcgcaatgcgcgcagcctttgtggccgtcaacgca
ggtaaacaagtagttgtactggtgcccaccacactgcttgcccagcaacactatgaaaac
tttaaggatagattcgccgattggcccgttgtcacagaggtgatgtcgcgatttagaacg
gcaaaagaacaaacccaagtgctcaagcagctggaagaaggtaaagtcgatatcgttatt
ggcacccataagttactgcaatctgaagctaaatttgaaaatctcggcttactgatcatt
gatgaagaacacagattcggtgtacgccaaaaagaaaaaattaaggcgctgcgggccaat
gtggatattttaaccctcacagcaacccccattccgcgaaccttaaatatggccatgtcg
ggcatgcgtgatttatccattattgccaccccgcccgccaaacgcttagcagtaaaaacc
tttgtacgcgaatccgatcccgcaaccgtacgcgaagccattctgcgggaaattctgcgg
ggcggccaagtctattatctgcacaataatgtcgaaagcattgaaaaatgtgcccaaggg
attatcgacttagtgcctgaagctcgcgttgtcgtcgcccatggtcaaatgcgtgaacgg
gatcttgagcgagtcatgtctgacttttatcatcaaagattcaacgtgttagtctgcact
actattatcgaaactgggattgacgtccccagcgcaaacaccattattattgagcgcgcc
gatacctttggtctggcacaattacaccaactgcgtggtcgtgtaggccgctcacatcat
caagcctatgcttatttgatgacaccacaccccaaacgcatgacaagtgatgcccgtaaa
cgccttgaagccattgatgcactagaagatcttggtgctggatttatgctcgcaacccaa
gatttagagatccgcggtgcgggagaactccttggggacgagcaaagcggccatatttcc
aaaattggttttagcctttacatggaaatgctcgagtcggcggtaaaagcgcttaaacaa
ggcaaagagccatcgcttgcgcaaatgctcaaccagcaatgtgaaatcgaactgaggatc
ccagcgctattgcctgaggcctatgtgagcgacgtaaatattcgcctatccttatataaa
cgcattgcaggctgcgaaacccaagaggcactcgatgaattaaaagtcgaattaattgat
cgctttggcttactgccagaggcaactaaaaacctcatggaaatgacgctctataaacat
caagcaactcgcctaggggcgactaaaattgaagtacacgccaaaggcggcagtatcgaa
tttagccatgatcatgtgatagatccgggttttattattggattactccaaagccagcca
caaatctatcgaatggaagggccgaataagttaaagttcagtcttactgctgaaacagcc
aaagatagactcgatgtagtcaaactcttgcttgaacaattatcgcaacatcgtcttgga
gataaatag
DBGET
integrated database retrieval system
