Sphingobium xenophagum: CJD35_03570
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Entry
CJD35_03570 CDS
T05146
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJD35_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_03570
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJD35_03570
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJD35_03570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
Kinesin
SWI2_SNF2
AAA_16
DUF87
Microtub_bd
UB2H
AAA_22
eIF3_p135
Motif
Other DBs
NCBI-ProteinID:
ASY43636
UniProt:
A0A249MQL2
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All DBs
Position
I:719364..721547
Genome browser
AA seq
727 aa
AA seq
DB search
MAIQIRTTLDEPDTETSFVPHRPARPDKSEGGRPFKLVSDYEPSGDQCTAIPELVEQALA
GERDQVLLGVTGSGKTFTMAKVIEALQRPALILAPNKILAAQLYGEFKSFFPDNAVEYFV
SYYDYYQPEAYVARSDTYIEKESSVNESIDRMRHSATRSLLERDDCIIVASVSCLYGIGS
VETYSAMTFSMKKGGIEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEIFPSHYEDT
AWRISFFGNEIEAIVEFDPLTGKKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAER
LKELESEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
ENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
SVSATPGKWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVTANGYRTL
VTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERALNETGR
RREKQEAYNREHGITPTTIKRNIGDIIAHVANKDSVLVETGDADRPHMVGHNLRAYIEDL
EKKMRAAAADLEFEEAGRIRDEIRKLEAEELGLPHDQQVAAPKGRATEGKPGTRKLRYGK
TQKKFGR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggccatccagatccgcaccacgctcgacgagcccgacaccgaaaccagcttcgtgccg
catcgccccgcgcgaccggacaagagcgagggcgggcgcccgttcaagctggtgagcgat
tatgagccatcgggcgaccaatgcaccgcgatccccgaactggtggaacaggcactggca
ggcgagcgcgatcaggtgctgctgggcgttacgggctccggcaagaccttcaccatggcc
aaggtgatcgaggcgttgcagcgcccggcgctgatcctggctcccaacaagatcctcgcc
gcgcagctttatggcgagttcaaaagcttctttcccgacaatgcggtcgaatatttcgtc
agctattatgattattaccagcccgaagcctatgtggcgcggtcggacacttatatcgag
aaggaaagcagcgtaaacgagagcatcgaccggatgcgccattcggccacgcggtcgctg
ctggaacgggacgactgcatcatcgtcgcatccgtttcctgcctctatggcatcggctcg
gtagaaacctattcggccatgaccttttccatgaagaagggcgggatagaggatcagcgc
gagatcatccgcaagctggtcgcgctccaatataagcgcaacgacgcaggttttgcgcgc
ggcaatttccgggtgaagggcgacaatctggaaatcttcccgtcccattatgaggatacc
gcctggcgcatatcctttttcggcaacgagattgaggccatcgtcgagttcgacccgctg
accggcaagaaggtcgccagcctcgattatgtgaaagtctttcccaacagccaccatgtc
acccccggcccgacgctgaagcaggcgatggaggcgatccgcttcgaactggccgaacgg
ctcaaggagctggagagcgagggcaagttgctggaggcgcagcggctggagcagaggacc
aatttcgacctggagatgatcgcggcgacgggatcatgcgcgggaatcgaaaattacagc
cgcttcctgactggccgcctgcccggcgaaccgccgccgaccctgtttgaatatctcccc
gaaaacgcgctgctgttcgtggatgaaagccaccagaccgtgccgcagatcggcgcgatg
gcgcgcggcgaccatcggcgcaagatcacgctggccgaatatggcttccgcctgccgtcc
tgcatcgacaaccgtccgctgcgcttcaacgaatgggacgccatgcggcctcagacggtc
agcgtctccgccacgcccggcaaatgggaaatggagcagaccggcggcgtgttcagcgaa
caggtgatccgccccaccggcctcattgaccccccggtcgagatcaagccggtcgaggat
caggtggacgacctgatcaacgaatgccgcaaggtcacggccaatggctatcgcaccctg
gtcaccacgctgaccaagcggatggccgaggatttgaccgaattcatgcatgaggcggga
atcaaggtccggtacatgcatagcgatgtcgagacgctggagcggatcgaactgatccgt
gacctgcggcttggcgtctatgacgtgctgatcggcatcaacctgctgcgtgaagggctg
gacatccccgaatgcgggctggtcgccattctggacgcggacaaggaaggctttttgcgt
tccgaaacctcgctgatccagaccatcgggcgcgcggcgcggaacgtggacgggcgggtg
atcctctatgccgaccggatcaccggcagcatggaacgcgcgttgaacgaaaccgggcgg
cggcgcgagaagcaggaagcctataaccgcgaacatggcatcacgccgacgacgatcaag
cgcaacatcggcgacatcatcgctcatgtggccaacaaggacagcgtgctggtggaaacc
ggcgatgccgaccggccccacatggtcggccacaatctgcgcgcctatatcgaggatctg
gaaaagaagatgcgcgccgccgccgctgacctggaatttgaggaagcgggacggatcagg
gacgaaatccgcaagctggaggcggaggaattgggcttgccgcacgatcaacaggtggca
gcgcccaagggacgcgcgaccgaaggcaagccgggtacgcggaagttgcgctatggcaag
acccaaaagaaattcgggcggtag
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