Sphingobium xenophagum: CJD35_17960
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Entry
CJD35_17960 CDS
T05146
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CJD35_17960 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_17960 (ligD)
Enzymes [BR:
shyd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CJD35_17960 (ligD)
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CJD35_17960 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASY46349
UniProt:
A0A249MYZ3
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All DBs
Position
II:694847..697351
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AA seq
834 aa
AA seq
DB search
MARKDALSTYNAKRDFDRTREPKGKVAKTGGNSFVVQKHAATRLHWDFRLEMDGVLKSWA
VTRGPSIDPADKRLAVRTEDHPLDYGTFEGLIPKGEYGGGTVMLWDRGTWEPIAGKSAAD
IEDGHLHFILHGERMKGEWLLVRMKGRPKEKRENWLLRKIDDKEAGSGDALVERALTSIV
TGRSMAEIEADKAGEQSLAGAHGKGFAAKMAAAKDHTAKISDRRKTRATALPRFVKPQLA
TLVDAVPTGNDWLHEIKYDGYRALIAASGQKVTLFTRNGLDWTEKFAPLTGAIAALDLPP
CLIDGEVVALDGNGNPDFSTLQQTLKRGHGQEDATRPLHLFAFDLLSLDGQDLKGLPTIE
RKERLEALLHQAESPIHVSDHVLGAGETLFRSLCEAGQEGIISKRADAPYRSSRTRSWVK
VKCTRRQEFVLVGWTRSNARGRPFASLLLAQHEGQKLVYKGKVGTGFDSQAMDELDKAMA
RLATDTAPVDVPRAETRGVSWIKPKLVAEIAFAEFTADGRVRHGSFLGLRADKPAKTVKP
EKPAPAPVPKSAIDISSRDRVIFPETGQTKGELADYYSRIAPLMLPFSANRPISLVRCPQ
GRAKKCFFQKHDSGAFGQEVRQMPIREKNGGSEDYIYVDSADGLLACVQMGTIEFHGWAS
RTDDVEKPDRMIFDLDPDEGLDFDKVKRAAKDIRDHLADIGLVSFAMLSGGKGVHVVVPL
TPGHNWDTHKDFASRFAQALSAAEPDRFTATMSKAKRKGRIFIDWLRNQRGSTAILPYSA
RARPGAPVAIPIDWEELDRMKDAHPFSIDDPDTLLKRSKGLKGWGFAAQALPEI
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaaggatgccctttccacctacaatgccaagcgggatttcgaccgcacgcgc
gaacccaagggcaaggtggcgaaaacaggcggcaacagcttcgtcgtgcagaaacatgcc
gcgacccgcctgcattgggattttcggctggaaatggacggggtgctcaaaagctgggcc
gtaacgcgagggccaagcatcgacccggccgacaaaaggctggccgtgcggacggaggat
cacccgctggattatggcacgttcgaaggcttgatccccaagggcgaatatggcggcggc
acggtaatgttgtgggatcgcggcacctgggaaccgatcgcaggaaagagcgctgccgat
atagaggatgggcacctgcatttcattctgcatggggagcggatgaagggcgagtggctg
ttggtgcggatgaaagggcgtcccaaggagaagcgcgaaaactggctgttgcgcaagatt
gacgacaaggaggccgggtcgggcgatgcgctggtcgaacgtgcgcttaccagcatagtg
acgggccgatcgatggcggagattgaggccgacaaggctggcgaacagtcccttgccggg
gcgcatggcaaaggcttcgctgcgaagatggcggcagcgaaggatcataccgccaaaata
agcgacaggcggaaaacgcgcgccacggccctgccccgcttcgtgaagccacaactcgcc
acgttggtggatgccgtgccgaccgggaacgattggctgcacgagatcaaatatgatggc
tatcgcgcgctgatcgccgcaagcgggcagaaagtgacgctttttacgcgcaacggcctg
gactggaccgaaaaattcgcgccgctcacgggtgcgatcgccgcgctggacctgccgccg
tgcctgatagacggcgaagtggtggcgctggacggcaatggcaatcccgatttctcgaca
ttgcagcagacgctcaagcgcgggcatgggcaggaggatgcgacacggccgctgcacctg
ttcgccttcgatctgctttcgctcgatgggcaagacctcaaggggctgcccaccatcgag
cgcaaggagcggctggaagcgctgctgcatcaggcggaatcgcccatccatgtctccgat
catgttctgggggccggagaaaccttgttccgatcgctttgcgaggccgggcaggaaggc
atcatctccaagcgcgccgacgcgccatatcgcagttcccgaacccgcagctgggtgaag
gtcaaatgcacccggcgccaggagttcgtccttgtcggatggaccaggagcaatgccagg
ggacgtcctttcgcgtccctgctgctcgcccagcatgaggggcaaaagctggtctacaag
ggcaaggtcgggaccggcttcgatagtcaggcgatggacgaactggacaaggccatggcc
cgcttggcaaccgacacggccccggtcgacgtgccccgcgcggagacgcgcggcgtaagc
tggatcaagccgaagctggttgccgaaatcgccttcgccgaattcactgccgatggtcgc
gtccgtcatggcagcttcctgggtctgcgtgccgataagccagcaaagacggtgaaaccg
gaaaagcccgcgcctgcccctgtgccgaagagcgcgatcgacatcagcagccgtgatcgg
gtcatcttccccgaaaccggccagaccaagggggaactggcggattattattcccgcata
gcgccgctgatgctgcctttctccgccaaccggcccatcagcctggtccgctgtccacaa
gggcgagcgaagaaatgcttctttcagaagcatgacagcggcgccttcggacaggaagtc
cgacagatgcccattcgcgagaaaaacggcgggtcggaagattatatctatgtcgacagc
gcggacggcctgctggcctgcgtccagatggggacgattgaatttcacggctgggccagc
agaaccgacgatgtggagaagcccgaccgtatgatcttcgaccttgacccggacgaagga
ctggactttgacaaggtgaagcgagcggccaaggatatacgcgatcatctcgctgacatc
gggcttgtctccttcgcgatgctgtcgggtggcaagggcgtgcatgtcgtcgtaccgctg
acgcccggtcacaactgggacacgcacaaggatttcgcgtcgcgcttcgcccaggctctg
agcgccgcagagcctgaccgcttcactgcgacgatgagcaaggcgaagcgaaagggccgc
atcttcatagactggttgcgaaaccagcgtggcagcacggccatcctcccctattccgcc
cgcgcccgccccggcgcgcctgtcgccataccgatcgactgggaagaactggacaggatg
aaggacgcccatcccttctccatcgatgatcccgacaccctgctgaagaggagcaaaggc
ctcaaaggctggggatttgcagcgcaagccctgccggaaatttga
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