Shinella sp. HZN7: shn_27290
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Entry
shn_27290 CDS
T04278
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
shn_27290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_27290
Enzymes [BR:
shz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
shn_27290
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
shn_27290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANH07859
UniProt:
A0A1A9GBZ5
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All DBs
Position
pShin-03:complement(15260..17812)
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AA seq
850 aa
AA seq
DB search
MIMATLDVYRQKRDFKATSEPRGKKARRGGNSFVIQKHDATRLHYDFRLEMDGVLKSWAV
TRGPSLVPSEKRLAVHVEDHPLAYGDFEGTIPKGEYGGGTVIVWDRGTWEPLGDARKAYA
KGHLEFTLDGEKLHGRWHLVRMQGKPGEKRENWLLIKGDDEFAMPEGEDDLLDERPESVK
TGREIADVATEEPGWSSKTGRIRTSSRKKAKPEKKEPEAEAPDPSGLKGVRKAKLPDFLP
PTLATLAAAPPAGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTKKFGKAVVAALAA
LPVGTALIDGELVVETGAGASDFSALQADLSAGRDDRFTFYVFDLLHLDGYDLTHLRLEA
RKALLEKLVPETESILRYSGHFDENGALVLRHACRLSLEGVVSKLRDAPYREGRSKSWIK
SKCSARQEFVIGGYAPSTVSRQAIGSLLLGVHHKNGALEPVGRVGTGFSAPVAADLFKRL
SRMRTDESPFGRKLTAEEARQARYVRPELVAEVEFRAWTADGHLRHASFRGLREDKPAKE
VIAEMPKSRTSAASKVEKAPRRTVRLTHPDRVYWPEEGVTKEGLADYYTEVWRHIAPHIV
GRPLALLRAPSGIDGQTFFQKHAWKGINANIIEVQDPMEKDDEPYVAINDLDGLMGLVQS
AVLEIHPWGSTLADWERPDRIIMDLDPGEGVEWQAVIEAAEETRKRLEAAGLNAFVKTSG
GKGLHVCAPLKPSARWPAVKTFCKGIADAMAKDSPDKYVSTITKSKRRGKILIDYLRNQR
GMTAVAPYSTRARPGAAVSMPLAWNELSADIGPAYFTVDNTPTRLQALTTDPWADFKKAA
EPLKTGKAKG
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggcgacgctggacgtctaccggcagaagcgggacttcaaggccacctccgag
ccgcgtggcaagaaggcccgcaggggcggcaacagcttcgtcatccagaaacatgacgca
acacggctgcactatgattttcgcctcgaaatggacggcgtactcaaaagctgggcggta
acgcgcggcccgagcctggtgccgagcgaaaagcggctggccgtgcatgtggaggaccac
cccctcgcctatggcgatttcgagggcacgatccccaagggcgaatatggcggcggcacc
gtcatcgtctgggatcgcggcacctgggaaccgctcggcgacgcgcgaaaggcctacgcc
aagggacatcttgaattcacgctcgacggcgagaagctgcacggccgctggcatctcgtg
cgcatgcagggaaagcccggcgaaaagcgcgagaactggctgctgatcaagggcgacgac
gaattcgccatgccggagggcgaagatgacctgctcgatgaacggccggaatcggtgaag
acggggcgggagatcgccgatgtcgcgacggaggaacccggctggtcctcgaagacgggg
cgcatccgcacgtcatcgagaaagaaggccaaacccgagaagaaagaaccggaggcggaa
gcgcccgatccttccggcctcaagggtgtgcgcaaggcaaagctgccggacttcctgccg
ccgacgctggcgacactggcggctgcgccgccggcaggcgaacgctggctgcacgagatc
aagttcgacggctaccggcttcaggcgcgcatcgaggccggccgggtcaaactcctcacc
cgcagcgggctggactggacgaagaaattcggcaaggccgtggtcgccgcgcttgccgca
ctgccggtcggcacggcgctgatcgacggcgagctcgtggtcgagaccggcgccggcgca
tccgacttctccgctctccaggccgatctcagcgcaggacgggacgaccgcttcaccttc
tacgtcttcgatctcctgcaccttgacggctacgacctcacccacctgcggctcgaggcg
cgcaaggccctgctcgaaaagctcgtgccggaaacggagagcatcctgcgttacagcggc
catttcgatgagaacggcgcgctggtgctgcgccatgcctgccgtctcagcctcgaaggc
gtcgtctccaagctgcgcgacgcaccctatcgcgaaggccgcagcaagagctggatcaaa
tcgaaatgttcggcccggcaggaattcgtcatcggcggctacgccccgtccaccgtatcg
cgccaggcgatcggctcgttgctgctcggcgtccaccacaagaacggcgcgctcgaaccg
gtcggccgcgtcggcaccggcttcagtgcgcccgtcgccgccgatctcttcaagcgcctt
tcgcgcatgcggacggacgaaagccccttcggccggaagttgacggcggaagaggcacga
caggcccgctatgtgcggccggaactggtggccgaagtggaattccgggcctggacggcc
gatggtcatctgcgccacgcatcatttcgtggcctcagggaagacaagccggcaaaggag
gtcatcgccgaaatgccgaagtcaaggacatcagcagcatcgaaggtcgaaaaggcgccg
cgccgcacggtgcgcctcacccatccagaccgggtctactggcccgaagaaggcgtcacc
aaggaagggctcgccgattattacaccgaggtctggcgccatatcgccccgcatatcgtc
ggccgcccgcttgcgctgctgcgcgcgcccagcggcatcgacggccagaccttcttccag
aaacacgcctggaagggcatcaatgccaatattatcgaagtgcaggatcccatggagaag
gacgacgaaccctatgtcgccatcaatgatctcgatggcttgatgggcctcgtgcaatcg
gcggtgctggaaatccatccgtggggctcgacgcttgccgactgggagcggccggaccgc
atcatcatggacctcgaccccggagagggcgtcgaatggcaggcggtcatcgaagccgcc
gaggagacacgaaagcgcctcgaagccgccgggctcaacgccttcgtcaagacctccggc
ggcaagggcctgcacgtctgcgccccgctcaagccgtcagcacgctggccggcggtcaaa
accttctgcaagggcatcgcggacgccatggcgaaggacagccctgacaaatatgtctcg
accatcaccaaatcgaagcgtcgtggaaagatcctcatcgactatctacgcaatcagcgc
ggcatgacggcggtcgccccgtactccacccgcgcccgccccggcgcggccgtctccatg
ccgctcgcctggaacgagctcagcgccgatatcggccccgcctacttcaccgtcgacaac
acaccgacgcgccttcaggcgctgaccacggacccctgggcggacttcaagaaggccgcg
gagcctctgaagaccggcaaggcgaagggctga
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