Ruegeria pomeroyi: SPO2074
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Entry
SPO2074 CDS
T00215
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPO2074 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO2074 (mfd)
Enzymes [BR:
sil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPO2074 (mfd)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPO2074 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
SecA_DEAD
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAV95345
UniProt:
Q5LRQ1
LinkDB
All DBs
Position
complement(2206461..2209889)
Genome browser
AA seq
1142 aa
AA seq
DB search
MGGAPEGFDARLILNEVARAGAPVLHVARDDKRLEAMRAALAFFAPDLPVFVFPSWDCLP
YDRVSPNADVSAARMATLAALVHQMPDRFVLLTTLNAATQRVPARDLLREAAFSAQVGRR
VDEQALRQFLVRMGFSQSPTVMEPGDYAIRGGIIDIYPPGDSGPVRLDFFGDVLDGARRF
DPATQRTTEKLDLIELAPVSEVILDEAAITRFRQNYRIEFGAAGSDDPLYEAVSAGRKHQ
GVEHWLPFFHERLETLFDYLPAATVTLDDQVTPTRLARWDSIQDQYETRRLAMTDRSRTD
SVYKPLPPGLLYLDDGDWSAQLADRRVMQFNPLPQASGPGVIDAGGRIGRNFSPERALEN
VSLFGALVDHLKVRMADGPVLIASYSEGARERLTGLIEDEGLAEAIPVTNGTRIGKRGLH
LAVWALEHGFEAPGLTVISEQDVLGDRLIRQPKKRRKAENFLTETQSLTPGDLVVHVDHG
IGRYRGLEVITAAGAAHECIALDYAEEARLYLPVENIELLSKYGHEEGLLDRLGGGAWQA
KKAKLKERIREMADRLIRVAAERALRKAPVMDPPPHAWEDFSARFPYQETDDQLRAIGDV
MDDLHSGMPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLARQHAASFRDR
FRGFPLEVRQLSRFISAKEAQQTREGLARGTVDIVIGTHALLAKGIRFQNLGLLIIDEEQ
HFGVGHKERLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLAIRTYVSE
FDAVTVREALLREHYRGGQSFYVVPRITDLPDIEAFLKEQLPELTYVVAHGQMAAGELDD
RMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGRSKARAYA
YLTTKPRARLTPAAEKRLRVLASLDTLGAGFSLASQDLDIRGAGNLLGEEQSGQMPDVGY
ELYQSMLEEAIAKIRSGQMEGLSEADDQWAPQINLGVPVLIPEEYVPDLDVRLGLYRRLS
SLTTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKAMCKRAGIAKLDGGPKGATIQFHN
DKFASPAGLVEFIQAQKGLAKIKDNKIVVRRDWRSEADKIKGAFAVARDLADKVAAEKKS
KA
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
gtgggcggcgcgcccgaaggctttgacgcgcggctgatcctgaacgaggtcgcccgcgcg
ggcgcaccggtgctgcatgtggcccgcgatgacaagcggctggaggcgatgcgggcggcg
ttggccttcttcgcgcccgacctgccggttttcgtgtttcccagctgggattgcctgcct
tacgaccgggtctcgcccaacgccgatgtctcggcggcgcggatggcgacgctggcggcg
ctggtgcaccagatgcccgaccgtttcgtgctgctgaccacgctcaacgctgcgacccag
cgggtgcccgcgcgcgacctgctgcgcgaggcggcctttagcgcccaggtggggcggcgc
gtggatgaacaggcgctcagacaatttcttgtccgcatgggcttcagccagagtcccacg
gtgatggaacccggcgattacgcgatccggggcggcatcatcgacatctatccgcccgga
gacagcgggccggtgcggctcgatttcttcggcgacgtgctggacggcgcgcgccggttc
gatcccgccacccagcgcaccaccgagaaactggacctgatcgaactggccccggtcagc
gaggtcattctggacgaggcggccatcacccggttccgccagaactatcgcatcgagttc
ggcgccgccggcagcgacgatccgctttacgaggcggtgagtgccgggcgcaagcatcag
ggcgtcgaacattggctgcccttctttcatgaacggcttgaaaccctgttcgactatttg
cccgccgcaacggtgacgctggacgatcaggtgacaccgacccggctggcgcgctgggac
agtattcaggaccagtacgagacccgccgtctggccatgaccgaccgctctcggacggac
agcgtctataaaccgctgccgccggggctgctgtatcttgatgatggcgattggtcggcg
caactggccgatcggcgggtgatgcagttcaacccgctgccgcaggccagcggcccaggc
gtgatcgacgcgggcgggcggatcgggcgcaatttctcgcccgagcgcgctctggaaaac
gtcagcctgttcggggccttggtcgatcatcttaaggtcagaatggcggatggtccggtg
ttgatcgcctcgtattccgaaggcgcgcgcgaacgtctgaccgggctgatcgaggacgag
ggcctggccgaggcgatcccggtgaccaacggcacgcgcatcggcaagcgcggcctgcat
ctggccgtctgggcgctggaacacgggttcgaggcgcccggcttgacggtgatctcggaa
caggacgtgctgggcgacaggctgatccgccagcccaagaagcgtcgcaaggccgagaat
ttcctgaccgagacccagtcgctgacccccggcgatctggtggtgcatgtggatcacggc
atcgggcgctatcgcgggctcgaggtgatcaccgccgccggtgcggcccatgagtgtatc
gcgctcgactatgccgaggaggcgcggctgtacctgccggtcgagaatatcgagctcttg
tcgaaatacggccatgaagaggggctgctcgaccggcttggcggtggcgcctggcaggcc
aagaaggccaagctgaaggaacgtattcgcgagatggccgaccggctgatccgggtggcc
gccgagcgcgccttgcgcaaggcgccggtgatggacccgccgccgcatgcctgggaggat
ttcagcgcccgctttccctatcaggagaccgacgatcagttgcgcgccattggtgacgtg
atggacgatctgcattcgggcatgccgatggaccggctgatctgcggcgatgtgggcttt
ggcaagaccgaggtggcgatgcgcgcggcctttgtcgcggccatgtcggggctgcaggtg
gcagtgatcgcgcccaccacgctgcttgcgcgccagcatgccgccagtttccgcgaccgc
ttccggggctttccgctggaggtgcgtcagctcagccgtttcatctcggccaaggaggcg
cagcagacccgcgaggggctggcgcgcggcacggtggatatcgtgatcggcacccatgcg
ctcttggccaagggcatccggttccagaacctcggcctgctcatcatcgacgaggaacag
catttcggcgtcggtcacaaggagcggctgaaacagctgcgctcggacgtgcatgtactg
acgctgacggccaccccgatcccgcgcaccctgcagctgagcctgaccggcgtgcgggat
ctctcgatcatcggcacgccgccgatcgaccggttggcgatccgcacctatgtcagcgag
ttcgacgcggtcactgtccgcgaggcgctgttgcgcgagcattaccggggcgggcagagt
ttctatgtggtgccccgcatcaccgatctgccggatatcgaggcgttcctgaaggaacag
ctgccggaactgacctatgtggtggcgcatggccagatggcggcgggtgagctcgacgac
cgaatgaacgctttctacgacggcaaatacgatgtgctgctggccacgaccatcgtcgaa
agcgggctggacatccccaccgccaacacgatggtggtgcatcgggccgatatgttcgga
ctagcgcagctctatcagatccggggccgggtgggccggtccaaggcgcgcgcctatgcc
tatctgaccaccaaacccagggcgcggcttacacccgccgccgaaaagcggctgcgggtg
ctggcctcgctcgacaccttgggggcggggttctcgctggccagccaggatctggacatt
cgcggcgcaggcaacctgttgggcgaggaacagtccggccagatgccggatgtgggctat
gagctttaccagtcgatgctggaggaggcgatcgccaagatccgcagcggccagatggag
gggctgagcgaggccgacgaccaatgggcgccccagatcaatctgggcgtgccggtgctg
atccccgaggagtatgtacccgatctggacgtgcgcctcggtctctaccggcggctttcg
tcgcttacgaccaaggtcgagctggagggctttgccgccgaactgatcgaccggtttggc
aagctgccgaaggaggtgaacacgctgcttctggtggtgcggatcaaggccatgtgcaag
cgcgcaggcattgccaagctggacggcgggccaaagggggccacgatccagttccacaac
gacaagttcgcctcgccggcggggttggtggagttcattcaggcgcaaaagggcctggcc
aagatcaaggacaacaagatcgtggtgcgtcgcgactggaggtcggaggcggacaagatc
aagggcgcctttgcggtggcccgggatctggccgacaaggttgcggcggaaaagaagagc
aaggcgtag
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