Simplicispira suum: C6571_00695
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Entry
C6571_00695 CDS
T05361
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
simp
Simplicispira suum
Pathway
simp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
simp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6571_00695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
simp03400
]
C6571_00695 (mfd)
Enzymes [BR:
simp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6571_00695 (mfd)
DNA repair and recombination proteins [BR:
simp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C6571_00695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
HCV_core
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AVO40010
UniProt:
A0A2S0MVT4
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All DBs
Position
144820..148296
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AA seq
1158 aa
AA seq
DB search
MQLPKLSPGKRFGLPRPPGSADALLLARLAERERGQSGVTAIVTADASDARRLLDEIAFF
APDLRCALFPDWETLPYDSFSPHQDLISERLATLWRISQRDRDTGADVVLVPATTALYRL
APPSFLAGYTFHFQLGQKLDEAKLRAQLTLAGYAHVGQVVSPGEYAVRGGLIDLFPMGSA
VPYRVDLFDDEIDSLRAFDPDSQRSLYPVAEVRLLPGREFPMDDDARARFRSRWREVLEG
DPTKSRIYKDIGQGVATAGIEYYLPLFFEQTATVFDYLGDKATVVLHGDLEPAFQRFWQD
TRERYRLVQGDPERPALPPDALFLSADQFYTGAREYAQLALRTGVEDVPDSAIFQRLPDI
SVVRGAPEPLARLQSHVATGQHRVLVLAESAGRRESLLDFLRAGGIDLPSFDSLAEFEQA
VGEPLGIATAALAEGFAWVEQGIDFVTETELFSTPATARRRRKQEQVSDVESLIKDLSEL
TLGDPVVHSAHGIGRYRGLVNMDVGNQNPDGTPALQEFLHLEYAANAVLYVPVSQLQLIS
RYSGVSPDEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYNAQHY
EQFVSDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEVSRFRSGKEVTAALKGIADGTVDIVVGT
HKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMALEGL
RDLSVIATAPQRRLAIKTFVRSEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLE
EILPEARIAVAHGQMPERQLERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDVESLTKHAQQRLDAIQAMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEIGFQLYNEMLGEAVRSLKAGKEPDLLAPLNVTTDINLHAPA
LLPEDYCGDVHLRLSFYKKLATARTPEQIDGLLEEIVDRFGKLPPQAQTLLDVHRLRVLS
QPYGVLKVDSAPMVTTISFRPGAPVDPMRVIELVQKNRHIKLAGNEKLRIERELPDAPAR
VQLVRDLLRNLGAPVAPN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcaactccccaaactctctcctggcaagcgcttcggcttgccccgacctcccggcagc
gctgatgccctgttgcttgcgcggctcgccgaacgcgagcgcggccagagtggcgtgacc
gccatcgtcacggccgatgcgtctgacgcgcgccgcctgctcgatgaaattgcgttcttc
gcaccggacttgcgctgcgctttgtttcccgactgggaaaccctgccttacgacagcttt
tcgccacaccaggacctgatcagcgagcgcctggcaacgctgtggcgcatcagccaacgc
gaccgcgacaccggtgccgacgtggtgctggttcccgctaccaccgcgctgtaccggctg
gcacccccgtcgtttttggcgggctacacctttcatttccagctggggcaaaaactggac
gaggccaagctgcgcgcccagttgacgctggccggctacgcccatgtcggccaggtggtg
agcccaggcgagtatgcggtgcgcggcggtctgatcgacctgtttcccatgggctccgca
gtgccctaccgggtggacctgtttgacgacgagatcgactcgctgcgcgctttcgacccc
gatagccagcgcagcctctaccccgtggccgaagtgcgcctgcttccggggcgtgaattc
cccatggacgacgatgcccgcgcacgttttcgcagtcgctggcgcgaagtgctcgaaggc
gacccgaccaagagccgcatctacaaggacattggccagggcgtggccacggccggcatc
gagtactacctgccgttgttctttgagcagactgccacggtgttcgactacctgggcgac
aaggccaccgtggtcctgcatggggaccttgaaccggcgtttcagcgattttggcaagac
acgcgtgaacgctaccgcctggtgcagggcgaccccgagcgccctgccctgccgccggac
gcattgttcctcagcgccgatcagttctacaccggggcacgcgaatatgcgcaattggcc
ttgcgcaccggagtggaggatgtaccggacagcgccatcttccaacgccttcccgacatc
tcggtggtgcggggggcgccggaaccgctggcgcgcctgcaaagccatgtagcgaccggc
cagcaccgggtgctggttctggccgagagtgccggccggcgcgagagcctgctcgacttc
ttgcgcgccggtggcatcgacctgccgagctttgattcacttgccgaattcgagcaggcg
gtcggcgaacccctaggcattgccaccgcagccctggccgaaggctttgcctgggtggag
caaggcattgatttcgtcaccgaaaccgaactgttttcgaccccggcgacggcacggcgt
cggcgcaaacaagagcaggtcagcgatgtcgagtcgctcatcaaggatctgtcggagctg
accctgggcgacccagtggtgcacagtgcccatggcatcggccgctaccgcggcttggtg
aacatggacgtgggcaatcaaaaccctgacggtacgcccgcgctacaggaattcctgcat
ctcgaatacgcagccaacgcggtgctctatgtcccggtgagccaattgcagcttatcagc
cgctattccggcgtgtcaccggacgaagcgccattgcacaagctgggcagcggccagtgg
gaaaaagccaagcgcaaggccgccgagcaagtgcgcgacagcgccgccgagctgctgaac
atctatgcccggcgcgcagcgcgcgagggccacgccttccgttacaacgcgcagcactac
gagcagtttgtcagcgatttcggctttgaggagacggccgaccagaacgcagccatccac
gctgtcatccaggacatgatcagcccgcgccccatggaccgcctggtctgtggtgatgtc
ggctttgggaagaccgaagttgctttgcgcgcggccttcgtcgccgtcacgggtggcaaa
caggtggccttccttgcgccgacgactctcttggcagagcagcattaccagacgctggtg
gaccgtttttccaaatggccggtgaaagtggcggaagtctcgcgttttcgttccggcaag
gaagtgactgcggcgctcaaaggcattgcagatggcacggtagacatcgtcgtcggcacc
cacaagctgctctccgaatccacaaaattccacaatctcggcctgctcatcattgacgaa
gagcaccgctttggcgtgcgccacaaagagcagatgaagcagttgcgcgccgaggtggac
gtgctgacactcaccgccacacccattccgcgcactctgggcatggcgctcgaaggcctg
cgcgatctctcggtgatcgccacggcgccgcagcgccgcctggcgatcaagacctttgtg
cgcagcgaaggcacgggggtgattcgcgaggccgtcttgcgtgaattgaagcgcggcggt
caggtgtactttctgcacaacgaagtcgaaaccattgagaaccggcgccagaaactggaa
gaaatcctgccagaggcacgcattgccgttgcccatggccagatgcctgagcggcaactt
gaacgcgtgatgcgggattttgtggcccagcgctacaacctgttgctgtgctcaaccatc
attgaaaccggaatcgacgttccgacagccaacaccatcgtcatgagccgcgccgacaag
tttggcctggcgcagttgcaccaactgcgtggacgcgtgggccgaagccaccaccaagcc
tatgcctacctgatggttcccgacgtggaaagcctcaccaaacatgcccagcagcgcctc
gacgccatccaggcgatggaggagctgggcagtggtttctacctggccatgcacgacctg
gaaattcgtggcgccggcgaggtgctgggagagaaccagagcggaaacatgatggaaatc
ggctttcagctctacaacgaaatgctgggcgaggccgtacgcagcctcaaggcggggaaa
gagccggatctgttggcgccgctcaacgtgaccaccgacatcaacctgcatgcacctgcc
ttattgcccgaggactactgcggcgatgtccacctgcgcctgtcgttctacaagaagctg
gctactgcgcgcacgcccgaacagattgacggtttgcttgaagaaatcgtcgaccgcttc
ggcaagctccccccccaggcacaaaccttgttggatgtgcaccgcttgcgcgtgctgtcg
caaccttacggcgtgctcaaagtggactccgcgcccatggtcaccaccatcagtttccgg
ccaggcgcgccagtggacccgatgcgcgtgatcgaactggtgcagaagaaccgacacatc
aagctggctggcaacgaaaagctgcgcatcgagcgcgagttgcccgacgcaccggctcgt
gtccagctggtgcgtgacctcttgcgcaacctgggcgctccggtggcacccaactaa
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