Sesamum indicum (sesame): 105156699
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Entry
105156699 CDS
T04135
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105156699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105156699
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105156699
Spliceosome [BR:
sind03041
]
Complex C
Other components
Step II factors
105156699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SLFN-g3_helicase
AAA_19
AAA_30
Flavi_DEAD
nSTAND3
T2SSE
AAA_24
Sigma54_activ_2
AAA_14
ABC_tran
AAA_16
AAA_7
NB-ARC
PhoH
ATPase
Sigma54_activat
SRP54
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
105156699
NCBI-ProteinID:
XP_011071216
UniProt:
A0A6I9SMM1
LinkDB
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Position
LG2:18271819..18280942
Genome browser
AA seq
1281 aa
AA seq
DB search
MESNGGSGLFDVDRTTDTLVPEESTGGLFVPGKDRVVFRPPERRSVLGLDVLANAKRESK
GEGPFKVPKERVASVAASLDEDEEKSTSGIDEVENDTSLDGVRNYTNRRYRELASSEASD
SGVTEEVQTSEALHGRRANKHMQVPTASSGRSRNRSPSSDYTDHDRSRSRSRYGDYNRSS
NKATRSRHGSESEGRTPRESSHGQEKEHSGEYGRKKSRYDRYMRTPGRSEWDDGRWEWED
TPRRDGRSSSSRHHQHPSPMLVGASPDARLVSPWLGGRTPSSSAAASPWDSIAPSPTPIR
ASGSSVRSASSRYGGKSDQMNFSSDKVHLAEDGENGAENICEDQNHEISESMRLEMEYNS
DRAWYDREEGSTMYDADGSSFFLGDEASFQKKETELAKRLVRKDGSKMTLAQSKKLSQLT
ADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERKVILLVHDTKPPFLDGRIVFTKQAEPIM
PLKDPTSDMAIISRKGSNLVREIREKQSMNKSRQRFWELAGSKLGEILGVEKTAEQIDAD
TAVVGEEGEIDFKEDAKFAQHLKKGEAVSDFAKSKTLAQQRQYLPIFSVREELLQVIREN
QVVVVVGETGSGKTTQLTQYLHEDEYTTNGIVGCTQPRRVAAMSVAKRVSEEMETELGDK
VGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDSDLEKYRVVVMDEAHERSLSTDVLFGIL
KKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVQILYSKTPCEDYVEAAV
KQAMMIHITSAPGDILIFMTGQDEIEATCYALSERMEQLIATKKEAPKLLILPIYSQLPA
DLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKIKVYNPRMGMDALQVFP
VSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKID
NLLDFDFMDPPPQENILNSMYQLWVLGALNNVGDLTDLGWKMVEFPLDPPLAKMLLMGEQ
LGCINEVLTIVSMLSVPSVFFRPKDRVEESDAAREKFFVPESDHLTLLNVYQQWKANQYR
GDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHNAARL
KGVGEYVNCRNGMPCHLHPSSAIYGLGYTPDYVVYHELILTTKEYMQCATAVEPQWLAEL
GPMFFSVKESDTSMLEHKKKQKQEKTAMEEEMENLRKVQEERERESIEKERMKRAKEQQR
VSMPGLKLGSSTYLRPKKLGL
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggagagcaatggaggtagtgggctatttgatgttgataggacaacagatactttagta
ccagaggagtccactgggggtctgtttgtacctgggaaggacagagttgtgttcagacct
cctgaacggagatcagttttagggctggatgtcctcgccaatgcaaaacgtgaatcaaag
ggtgagggtccgtttaaggttccgaaagaaagagttgcctctgttgcagcttctcttgat
gaagatgaagaaaagtctacttcaggaattgatgaagtggagaatgacacatcgttggat
ggtgtacgcaattatactaataggagataccgtgaactggcttcaagtgaggcatctgat
tcaggtgtgacggaagaagtacaaactagtgaagcactccatgggcgtcgtgcaaataaa
catatgcaggttccgacagcatcatctggaaggtctaggaataggagtcccagttctgac
tatacggaccatgatagaagcagaagcagaagcagatatggggattataacagaagctct
aataaagcaacaagaagtagacatggctctgaaagtgaaggaaggacgcctagggagtca
tctcatggtcaagaaaaagagcatagtggagaatatggaaggaagaaaagtagatatgat
aggtatatgaggacgcctggaagatccgaatgggatgatggacgatgggaatgggaagat
accccacgccgtgatggtcgcagttctagcagcagacaccatcaacatccatcccccatg
cttgttggggcctcacctgatgcacgacttgtttccccatggttgggagggcgtacccct
agttcatctgctgctgcatctccttgggatagcattgctccttcccccactccaattcgg
gcatctgggtcgtctgttaggtctgcaagttctcgatatggtgggaagtctgatcagatg
aacttctcttcggacaaggtgcatttggctgaggatggagaaaatggtgcggaaaacata
tgtgaagaccagaatcatgagatatcagaaagcatgcgtttagagatggagtacaattct
gatcgtgcctggtatgatcgagaagaaggcagcactatgtatgatgcagatggctcctca
ttttttcttggtgacgaggcatcttttcagaagaaagaaacggagttggccaaaagactg
gtccgcaaagatgggagtaagatgactcttgcacagagcaaaaagttgtcgcagctaact
gctgataatgcccagtgggaggaccgacaacttctgagatcaggagctgtcagaggaact
gaggtgcaaactgagtttgatgacgaggaagaacggaaggttattcttcttgtgcatgac
acaaaacccccttttcttgatgggaggattgttttcacgaagcaagctgagcctattatg
ccactaaaagacccgacctctgatatggccataatatcacgaaaaggctccaatctggtt
agggaaatccgtgaaaaacaaagcatgaacaagtcacggcaacggttttgggagcttgcg
ggttcaaagctaggtgaaattcttggagtcgagaagactgcagaacagattgatgcagat
actgctgtagtgggtgaagaaggtgaaattgacttcaaagaggatgccaaatttgcccag
catttaaagaagggtgaggcagtgagtgattttgctaaatcaaaaacgctagcccaacag
cgacagtatttgcccattttttctgtacgcgaggagttactacaggtcatccgtgagaat
caggtggtggtagtggttggtgaaactggttctggaaaaacaacacaactaacacagtat
cttcatgaagatgagtacacgaccaatgggattgttggttgcactcaaccaaggcgtgta
gctgctatgagtgttgccaagagagtcagtgaagagatggaaactgaacttggtgataaa
gttggatatgcaatacggttcgaggatgtgactgggcctaacactgttattaagtacatg
actgatggtgtgcttctgagggagacactgaaggattctgatctagagaaatatcgtgtt
gttgtgatggatgaagcacatgaacgatctctaagcactgatgtgctatttggaatcctg
aagaaagttgtggccagacgacgtgatttcaagctaattgtaacgtctgcgacgcttaat
gctcagaaattttcgaatttctttgggagtgtacctatatttcacattcctggaagaact
tttccagttcaaatcttgtatagtaaaacaccttgtgaagattatgttgaagctgccgtg
aaacaggccatgatgattcacatcacaagtgctccgggcgatattctcatcttcatgact
ggtcaagatgagattgaggcaacctgttatgctctttctgaacgcatggagcagcttatt
gcaacaaagaaggaagccccgaagctgttaattcttcccatatactcccagttgccagct
gacttgcaagcaaagatatttcagaaagctgaagatggagctcgcaagtgtattgttgct
accaatattgctgagacatctttgactgtagatggaatcttctatgtcattgacacaggt
tatggtaaaataaaagtctataaccctcgtatgggtatggacgctctccaagtgtttcct
gttagccgtgctgctgcggaccagcgtgctggacgtgctggaagaactgggccggggact
tgctatcgtctttataccgaaagtgcgtatctaaatgagatgcttcccagtcctgtgcca
gaaattcaacggaccaacctcggcaatgtggttttgttgctcaagtctctgaaaattgac
aatttgttggattttgactttatggatcctcctcctcaagagaacatcctcaactccatg
taccagttgtgggtgttgggtgctttgaacaatgttggggatctgacagatctaggctgg
aaaatggtagagtttcctcttgatcctccccttgccaagatgcttttaatgggcgagcag
ctaggatgcattaatgaagttttgacaattgtgtcgatgctttcggtgccatctgttttc
tttagacccaaggatagggttgaggagagtgatgccgcacgggaaaaattcttcgtgcca
gagtccgaccatcttacccttctaaatgtataccagcaatggaaagccaatcaatatcgg
ggtgattggtgtaatgaccattttctgcacgtcaagggattgcgcaaggctagagaggtg
agatcccagctactggatattttgaagacgttgaagatacctctcacatcatgtgggccc
gactgggatgttgtgagaaaagccatatgttctgcttatttccataatgctgcacgactc
aagggggtcggcgagtatgtcaactgcagaaacggaatgccatgccacttgcatccaagc
agtgctatatatggattgggttatactccagattatgtggtttatcatgaactgatcttg
acaacgaaggagtacatgcaatgtgcaacagcagtcgaaccccagtggctggctgagctg
ggacccatgtttttctcggtgaaggagtcggacacatcaatgttagaacataagaagaaa
cagaaacaagaaaaaactgccatggaggaagagatggagaatttgaggaaggtccaagag
gagagggagagggagagcatagagaaggagaggatgaagagggctaaggaacagcaacga
gtttcaatgcctgggttgaagctgggctcttccacttatttaagaccaaaaaaacttggc
ttgtag
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