Sesamum indicum (sesame): 105171210
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Entry
105171210 CDS
T04135
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03022
Basal transcription factors
sind03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105171210
09124 Replication and repair
03420 Nucleotide excision repair
105171210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105171210
03400 DNA repair and recombination proteins [BR:
sind03400
]
105171210
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105171210
DNA repair and recombination proteins [BR:
sind03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105171210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
RNase_Zc3h12a_2
Motif
Other DBs
NCBI-GeneID:
105171210
NCBI-ProteinID:
XP_011090547
UniProt:
A0A6I9U1X3
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All DBs
Position
LG9:complement(10032196..10041735)
Genome browser
AA seq
453 aa
AA seq
DB search
MPQLKIVARNFMDMVASLPAMKLDKLYENSFICEAILRSLPPLAKKYVLQLLYIDGPVTA
KWLEEWVLADGISKHRVAVDRLIQLRILTETVERKKEATYLFNPTFQRNLQKHILHGGVL
PREPMPSNIIARLPSLEDLDAYAVQQWELFLLHLISSSEAEKSTNISSSMMKVFQRGLLS
QKDDKEPPKLTESGFQFLLMDTNAQLWYIVREYINNCEVSNVQALFVFQFLLXLSFHITG
KAYNLNTLSDIQRSIIKDLADLGLVKLQQGRKESWFIPTKLATNLSISLADTSSRKQGFV
VVETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISF
LQQNAHPRVAERTPSVPENVTDQIRLWEADLNRVEMTPAHFIDEFPSRDVFDAACDFARE
YGGLLWENSKKMRLVVKAEIFVQLKEFIRRQKQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaactgaaaattgtggcgagaaactttatggacatggtggcatcattgcctgca
atgaaactcgacaagctttatgagaattcattcatttgtgaagccatcctcagatctttg
cctccattggcaaagaaatatgtgctgcagctgttatacatagatggtccagtgacagcc
aagtggttggaagaatgggttctagctgatgggatctcaaagcacagagtggcagtagat
cgattaattcagttgagaatcctgactgaaactgttgagcggaagaaagaagctacatat
ctttttaatccaacatttcagcgtaatctccagaagcacatattgcacggtggagtttta
cctagagaaccaatgccttcaaacatcattgcgagacttcctagcttggaggatctagat
gcctatgctgttcaacaatgggagcttttcttgctgcaccttataagctctagtgaagcg
gaaaaatcaacaaacataagctcttccatgatgaaagtattccagcgtggtcttctgagt
caaaaagatgacaaggagcctccaaaattgacagagagtggcttccaatttctgctgatg
gacacaaatgcacaactttggtacatagtcagagaatatataaataactgtgaggtatca
aatgttcaggctctctttgttttccagtttcttttanaactcagctttcatattaccggc
aaggcatataacttaaacactttgtctgatatccagcgaagtataataaaggatcttgct
gatttgggattggtcaagctccagcagggcaggaaagagagttggttcatccctactaaa
ctggccaccaatctctccattagcttagcggatacatcatcaagaaaacaggggtttgtt
gtcgtggagaccaactttcggatgtatgcatactcatcatctaaattgcattgtgagatc
ttgcgcctcttcgcaagggttgagtaccagcttcctaacctcattgttggtgcaatcacg
aaagaaagcttgtataaagcatttcaaaatggcattacagcggaacagataatatctttt
cttcagcagaatgctcatcctcgagttgctgagagaacaccatctgtaccagaaaatgtt
actgatcagattaggttgtgggaagcagacttgaacagagtcgagatgacgcctgctcat
tttattgatgaatttccatccagggatgtctttgatgctgcttgtgatttcgctcgagaa
tatgggggtttgttgtgggaaaactctaagaagatgcggcttgtggtcaaagcagagatt
ttcgtacagctgaaagaatttatccgtcggcaaaagcagtag
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