Sesamum indicum (sesame): 105172257
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Entry
105172257 CDS
T04135
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105172257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105172257
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
105172257
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_14
TPR_17
TPR_19
TPR_16
TPR_8
TPR_9
TPR_12
TPR_7
BTAD
TPR_5
Motif
Other DBs
NCBI-GeneID:
105172257
NCBI-ProteinID:
XP_011091932
UniProt:
A0A6I9UCL7
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Position
LG10:8873458..8889171
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AA seq
1180 aa
AA seq
DB search
MALEEEDFSAIRQLQESLDHNPSDPSVHFNLGVLLWEKGGRTQEMREKAVEHLMVAAKLN
PQNAVAFRYLGHYYARIAPEPQRALKCYQRAVVINPDDLESGEALCDLLDEGGKESLVVA
ICREATEKSARAFWAFRRLGYLQAHQKKWSEAIQSLQHAIRGFPMSPDLWETLGLAYQRM
GMFTAALKSYGRAIELDNSRVFALIESGNTCLMLGSFRKGIEHFQQTLEISPHNVSALYG
LASALLGLAKECANLGAFRWGASLLEEACDVAVRGTSLAGNFSCSWKLHGDIQLMYARCY
PWAEEARPRHSDEISFKSSINTWKRTCHIAARIASHSYQRALHLAPWLATLYADVAVASD
LCSSFKESPKTDLNVWSVAEKMCLGALLLESYNDEFWVALGCLSYHTALKQHALIRGLQL
DVSLAVAWAYLGKLYRREGKKQLAQQAFDRARSIDPSLALPWAGMAADAGARMLDQNEAY
ECCLRATQIFPLAEFQVGLAKLAMHSSYLSSSEVFGAIQQSLQRVPHYPDSHNLNGLVCE
SRADYQGAITSYRLARCALKSFAGESSESYLRDISINLARSLCMAGNASDAVGECEYLGQ
KGQLDSEVLQIYALCLWQLGKNDMALSTMRSLASSILSLEESLAAASISFICRLLYHISG
QESAITSILKMPKEFFHSSKISFVVTAIHVLDPKDQLEPVVSRSRSFITCREDIIRMHIL
ITFGKLLKHGSDNSLGIQKGVDHLRKALHMYPNSSELRNLLSYLLLSSKEWRDLYLATRC
SFLDLSDKQKYKGIKSAFEILGAGTVACYAIGSPKEKFPFPTCRHQHPSGFGAIQLLQKF
LHQEPWNFNARYLLTLNCLQKARQERFAPQVCRVLERLTAVALHNQLYSSKYVSCQYQSF
QLLLCAAEVNLQQGNNSECFRYARSALGSSVDNSSLFFAHLLLCRAYAAEDDIINISKEY
KQCLELGTDFHIGWISLKFIESRYRLGDDSTMLPLCFEECCKDIKLSWNMWMALFNMVQG
LIAIWFGDFVAAEESFTQASSLADGESCVLLCHGAICMELARQKCESQYISRAIRSLMKA
RNASPDPLPIISLLLAQAEASLGSKAMWEVNLQNEWFSWPPEMRPAELLFQMHLLSRQHK
DDTMSSPSLGYADSPLSWILRAIHTNPSCSRYWKFLLKDM
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgaagaagaagacttttctgctataagacagttacaagaatcactggaccac
aatcccagcgatccctccgtacattttaatttgggtgtgctgctatgggaaaagggggga
agaacgcaagaaatgagggaaaaagcagtggagcatttgatggtggcagcaaagctcaac
cctcagaatgccgttgcattcagatatctgggtcattattatgcacgcattgcccccgag
cctcagcgggctctcaagtgctatcaaagagctgtcgtcatcaatcctgatgatctggaa
tctggggaagcactttgtgatttattggatgagggtgggaaagagagtttggtggttgct
atctgccgtgaagctacagagaagtctgcccgggctttttgggcttttcgacggttggga
taccttcaggctcatcaaaagaaatggtctgaagctatacagagcctccaacatgcaatt
cgtggctttcctatgtctcctgatttgtgggagaccttaggtcttgcctaccaacggatg
ggcatgtttactgctgcacttaagtcctatggaagagctattgagttggataattcaagg
gtttttgcgttgattgaaagtggaaatacgtgcttgatgcttggttcttttagaaaggga
attgagcacttccaacaaacattggaaatttcacctcacaatgtttctgcactttatggg
cttgcttctgcacttcttggtttagcaaaggagtgtgccaatctgggtgcctttaggtgg
ggagcctccctcttagaggaagcatgtgatgtagccgtgcgtggtacatctttagctggt
aacttttcatgttcatggaagctacatggagatattcagcttatgtatgccagatgttac
ccatgggcggaggaagccaggcccaggcattctgacgagatatctttcaaatcttctatc
aatacatggaaaagaacctgccatattgctgctagaattgctagtcactcctatcagcgt
gctctgcacttggctccttggttggctactttgtatgctgatgttgctgtagcatcagat
ctctgttcgtcttttaaggagtctccaaagactgacctgaatgtttggtctgtggctgaa
aagatgtgcttgggtgctttactacttgagagctacaacgacgaattttgggtagcacta
ggatgcttgtcatatcacactgcattaaagcaacatgctttaatacgtggattgcaattg
gacgtatctctagctgttgcatgggcatacctggggaagctttataggcgggaaggcaaa
aagcagttggcccagcaagcatttgatcgggctagaagtatagatccttcacttgcatta
ccatgggcaggcatggcagctgatgcaggtgctagaatgcttgaccagaatgaagcatat
gagtgctgtttacgggctacacaaatatttccgcttgcagaattccaagttggtcttgca
aagcttgcgatgcattctagttatttgtcatcatctgaggtttttggagccatccaacag
tcattgcagcgtgtcccacactatcctgattctcacaatttgaatgggctagtgtgtgaa
tcaagagctgattatcaaggtgctattacttcctacaggctggcaagatgtgctctaaaa
tcatttgcgggcgaatcatcagaatcctatctaagagatatatccatcaatttagccaga
tcgctttgcatggctggaaatgcaagtgatgcagttggagagtgtgaatatttagggcaa
aaaggacagcttgattctgaggttctgcagatatatgctctatgcttatggcaacttggc
aagaatgatatggctctgtccacaatgagatctcttgcttcgagtattttatccttggaa
gaaagtcttgctgctgcttccattagcttcatctgtaggttgctctaccacatttctggg
caggaatcagcaattacaagcattttgaaaatgcccaaggaattttttcacagttcaaaa
attagtttcgtcgttactgctattcatgttctggacccaaaagatcagcttgagcctgtt
gtttctaggagtcgttccttcattacatgtcgtgaagatatcatcagaatgcatatttta
attacatttggtaaacttctcaaacatggaagtgacaattcccttggaattcagaaggga
gtagatcatctcagaaaagctcttcacatgtaccctaacagtagtgagctaagaaatctt
cttagttatctcttactctcaagcaaagaatggagagatctttatcttgcaactagatgc
tctttcttagatttgtctgacaagcaaaagtacaaaggcataaaatctgcatttgagatc
cttggcgctggaactgttgcttgttacgccattggaagcccgaaggagaaatttccattc
ccaacatgtagacatcaacacccttctggcttcggagccattcaactgctgcaaaagttt
ttgcatcaagagccttggaacttcaatgcgaggtacttgctcacgttaaactgtttacag
aaggcgcgtcaggagagatttgctccacaggtttgccgtgtgctagaacggttaacagct
gttgctctgcataatcagctttattcaagcaaatatgtttcgtgccaataccaaagtttt
cagcttttactctgtgctgccgaggttaatcttcaacaaggaaataacagtgaatgcttc
agatatgcgagaagtgctttaggttcttcagttgataatagctctctcttttttgcacat
ttgctactctgccgtgcatatgctgctgaagatgatatcatcaacataagcaaagaatac
aaacaatgcttggagcttggaactgattttcatattggctggattagtctgaagtttatt
gaatctagatataggctaggagatgattctaccatgttaccattatgctttgaagaatgc
tgcaaagatatcaagctttcatggaatatgtggatggctctctttaacatggtgcagggt
ctcattgcgatttggtttggtgattttgttgcggcagaagagtccttcacacaagcaagc
tctttagctgatggcgagagttgtgtcttactttgtcatggtgccatatgtatggagctt
gccagacaaaagtgtgagtcgcaatatatatcacgtgccataagaagtctcatgaaagca
agaaatgcttctcctgatcccttacccatcatctcacttttgctggcacaagcagaagct
agccttggctccaaagcaatgtgggaggtcaacctccagaacgaatggttttcttggcct
ccagaaatgagacctgctgaactcttatttcagatgcatttgctttctagacagcataag
gacgatactatgtcatctcccagcctaggttatgctgatagtccactcagttggatttta
cgagcaatccacacaaatccctcatgttcaagatattggaagtttttactgaaggacatg
tga
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