Sesamum indicum (sesame): 105179553
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Entry
105179553 CDS
T04135
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105179553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105179553
03019 Messenger RNA biogenesis [BR:
sind03019
]
105179553
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105179553
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105179553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
105179553
NCBI-ProteinID:
XP_011101505
UniProt:
A0A6I9UIE6
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MESTRRPFDRSLSKEPGLKKPRLSEDPVAADRISNGRAGFPQRSAVSNSGGGASRPQRDR
DSESTDSVRGPYQLQSGQQLHQELVTQYKTALAELTFNSKPIITNLTIIAGENLNAAKAI
AATVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFIKAYKQVDPTVHPG
MRHLFGTWKGVFPPQTLQMIEKELGFTTAANGSSSGTAPRPDSQTQRPAHSIHVNPKYLE
ARQRLQTTKARGASSDTSGALVISHEDVEALDRTGSITSGRSWPDLYAKQHHRDQVNEPV
RDRSSSVTYADSEYGSGASGRSGLGTGRVIEKIKEPAYDRPWYESGSNITAVAHQKNGFG
LKHGLESYAAPEAANSDSDLQFKQNIAGRSTNGMSGNWKNSEEEEFMWGEMNSRPTVCSA
ADASAKDHWPSDDYDRLGFGSNLRSPQDMHGIGSRDDDEASADSISMDLGQVASRTRVQS
WSQKPPPPEGRMLSGTGKSMLGYSEGYPIGLNSSHSTLGRATSQALLGPAHIGDPSFKFS
TNLVPGPKVSVTQQGHTLGSMPSSTRSLMQQPASPSFSSHNPNQLLNFAERNQTSIGPPT
DPRRPSGHKSTGYHKQSSEDSLPLPSRDVNQASTQRLHPQSLRSSSAQIPPLQHKKHAPS
AQQRNLEVPEFESYGQGQNSLPSKLSGSESRSTMGNSSSDQSNPLTVDSPGQSITSSLLD
AVEKSGVLSGNSPVGSLTKPSFQEARPRSYLGDVQPPLPSRPAADVSSTPHVHGSTLLPT
FSQKKLEQPPLRTGQSSSSSAGVDSELAPSSVNSTSNPVSSLLSSLVAKGLISTVKPDLV
LSASPKRSDQPLDRGPGVAGTSCAPVSSVPISISRPLESIPSGPSSLKPAVASTSCALVS
SVPIAMSRPLESIPCHPSSLKPATKDSDGLPQAAAKTKHLIGFEFRPDVVRNLHPEVVSD
LLSELPHRCSLCGLRLKLEETLNRHMEWHALRDPEQNPADTTSRRWYINSFDWVAGIDYL
YLGDSPSDMLGDSVGTLESGEQXXXXCILCGELFEDFYSRERDEWMFRGAVYLTSPSSES
HEKNEDMSGSAILGPIVHANCISEDSVHDLRLACDVKLVLNA
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggagagtacccgcagaccgtttgatagatctctttcaaaagaaccgggactgaagaaa
cccaggctcagcgaggaccctgtagcagccgatcgaatctccaatggccgtgccggattt
cctcaacggtctgcagtttcaaactctggcggtggagcctcgagacctcagagggacagg
gattctgagagtacagattctgtgcgggggccctaccaactccagtccggtcagcagttg
catcaggagctggtgactcagtacaagactgcgctagctgagctgactttcaactcgaag
ccaataataactaacttgacaattattgccggtgagaatttgaatgcggccaaggccatt
gcagccactgtctgtgccaatattctcgaggttccaagtgagcaaaaactgccttcgcta
tatttattagacagcattgtgaagaacattgggagggattatataaagtactttgcctcc
agattacctgaggtctttattaaggcatataaacaggttgatcccaccgtacatcctggt
atgcgccaccttttcggcacctggaaaggagtcttccctccacagacacttcagatgatt
gagaaggagcttggatttactactgcagccaatggttcatcctcaggaacagcgcctagg
cctgactcacagacgcaacgtcctgcgcatagcattcacgtaaaccccaagtatttggag
gcaaggcagcgactgcaaaccaccaaggcaagaggagccagcagtgacactagtggagcc
ctggtgatctcccatgaggatgttgaagcactggacagaactggcagtataacttcggga
agatcatggcctgatctttatgctaagcaacatcacagagaccaagttaatgagccagtt
cgtgacagaagttcaagtgtaacatatgcagattctgaatatggttctggtgcatcaggg
cgttcaggtttgggaactggaagagtgattgaaaagattaaagagcctgcatatgacagg
ccctggtatgaatctggcagtaatataactgcagtggcccatcagaagaatggttttggc
ctgaaacatggacttgaaagctatgctgcccctgaggctgcaaattctgattcagatcta
cagttcaagcaaaacattgccggtaggagcaccaatgggatgagtgggaactggaaaaac
tctgaggaggaggagtttatgtggggtgaaatgaattctagacctactgtttgcagtgca
gctgatgcttcagctaaagatcattggccatctgatgattatgatagattgggctttggc
agtaatctccgtagtcctcaagatatgcatggtatcgggtcaagggatgatgatgaagcc
tcagcagattcaatatccatggatctgggccaagttgcttctaggactcgagtgcaatca
tggtcacaaaagccgcctccaccagaaggaaggatgctctctgggactggtaaaagcatg
ttaggttactccgaggggtaccctattggattgaacagttcacacagtacattgggcagg
gcaacttcccaggcacttctgggcccagctcatattggagacccaagcttcaagttttca
acaaatctggtgccagggcccaaagtttccgtgacacaacagggacatactcttggatct
atgccatcctcaacacgatcattaatgcaacaacccgcatcaccttctttctcatcacat
aatccaaatcaactactaaattttgctgagcgtaaccagacctcgattggacctcctact
gatccaagaaggccttcagggcataaaagtactggatatcataaacaatcttctgaggat
tctctgcctttgccgtctcgggatgtcaatcaggctagcacacagaggttgcatccccaa
agtttacggtcttcttctgcacagatacctcctttgcagcataagaaacatgctccctct
gctcaacagagaaatcttgaagttcctgaatttgaatcttatggacaagggcagaactca
ttgccatcaaaactttcaggctctgagagtcgctccacaatgggaaattcatcatcggac
caatccaatcctcttactgttgattctcctggacaatccattacgagcagtttgttggat
gctgtagaaaaaagtggagtgctgagtggtaattctcctgtgggtagcttaactaagcca
agttttcaagaagctaggcctaggtcatatctaggagatgtgcaaccacctcttccaagt
cgccctgctgccgacgtttcgtccactccgcatgttcatggaagcacattgctccctaca
ttttctcaaaaaaagttagaacagccacccttgcgaactggccagtcctcctcatcttca
gcaggtgttgactcagaactggcaccaagttcagttaattccacctctaatcctgtttct
agtctgttaagctcattggttgccaaaggcttgatatccactgtgaagcctgatctagtg
ttgtctgcatcacctaagagatccgatcaaccactggacagaggtcctggggttgcaggc
actagttgtgctccagtttcttctgttccaatctccatatcgagacctcttgaatcgatc
ccatctggtccgtcttcacttaagcctgcagttgcaagcactagttgtgctctagtttct
tctgttccaattgccatgtcgagacctcttgaatcgatcccatgtcatccgtcttcactt
aagcctgcgactaaagattctgatggtttgccccaggcagcagcaaagacaaaacatctt
attggttttgaattcaggccagatgtagttcgtaatttgcatccggaagtggtcagtgat
cttctctctgagcttccacatcggtgcagcttatgtggtctcagactcaagcttgaagaa
acactcaacagacacatggaatggcatgcattaagagatcctgagcagaatcctgcagac
acgacatcaaggaggtggtatatcaactcatttgattgggttgctggaattgattattta
tatctcggagatagtccctcggacatgttaggagattccgttggaacattggaaagtggt
gagcagnnnnnnnnnncatgtattttgtgtggtgagttgtttgaagacttctacagccga
gaaagggatgaatggatgttcagaggagctgtttacttgaccagtccatcgtcggagtcc
catgaaaagaatgaagatatgagtggttctgctattctaggtcctatagtccatgcaaac
tgtatatcagaagactcagttcatgatttgagactggcttgtgatgtcaaattggtattg
aatgcataa
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