Sinomicrobium kalidii: LS482_06605
Help
Entry
LS482_06605 CDS
T07760
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LS482_06605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinh03400
]
LS482_06605 (mfd)
Enzymes [BR:
sinh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LS482_06605 (mfd)
DNA repair and recombination proteins [BR:
sinh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LS482_06605 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UGU18355
LinkDB
All DBs
Position
1635801..1639157
Genome browser
AA seq
1118 aa
AA seq
DB search
MRKLRDAIAHTQPQEKIYVNGLVGSSLSFVIAESFKDSDLPHLLILNDKEEAAYYLNDLE
RLIGEQHVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPALIVTYPDALFEKVV
TRKELERNTLKMKVGETLSPDFINEILFEYRFKRVDFVSEPGEFSVRGGIIDVFSFSNDE
PYRIEFFGDEIDSIRTFDVETQLSVEKLKKISIIPNVENKTLSESRESFLKYIPAKTVVF
LQNNDILSARIDNLFGKAEEAFASLSETVKHASPQELFCTSELLNTHLSAFTLAEMGNRT
QLPFKQRETPDYHTLISFHTRPQPSFNKQFDLLIRDLNQNSENGYTNYIFCVSEQQAKRF
HDIFEEIEGEVQYKTVVFPIYQGFIDDDQKTVCYTDHQIFERYHKFHLKNGYAKKQAITL
KELTHLEIGDYVTHIDHGIGKFGGLQKIQVEGKPQEAIKLVYGDGDILYVSIHSLHKITK
YNGKDGKPPKIYKLGSNAWKNLKKKTKTRVKEIAFSLIELYAKRRAQEGFPYAPDSYLQH
ELEASFLYEDTPDQSKATQDVKNDMESQHPMDRLICGDVGFGKTEVAIRAAFKAVDNSKQ
VAILVPTTILAFQHYKTFSERLEDLPVNIDYLNRFRTAKEKREILERLASGKTDIIIGTH
QLVNKNVKFHDLGLLIVDEEQKFGVAAKEKLKTLKENVDVLTLTATPIPRTLQFSLMAAR
DLSVITTPPPNRYPIESHVIQFNEEVIRDAVSYEIQRGGQIFFIHNRIENIKEVAGMIQR
LVPDAKIGIGHGQMEGKKLEKLMLAFMNGEFDVLVSTTIVESGLDVPNANTIFINNANNF
GLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTEDARKRIQALEQFTELGSGFNIAMKDLE
IRGAGDLLGGEQSGFINDIGFDTYQKILSEAIEELKENEFKDLYSENEKPRNYVKDTQID
TDFELLFPDDYVNNITERLNLYNQLSTMTNEEELEQFEADITDRFGPPPFQVTDLLNSVR
IKWIASRMGLEKVVLKHRKMVGYFISDQQSSFYQSATFKRVLKAVQQHPEHCKMKEKHTR
MGGLRLLLTFDNISSVNKALKALRPFVVEEEIHTEVKN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaactgcgggatgccattgcccatacccaaccccaggaaaaaatttatgtgaac
ggacttgtaggttcttccctctcttttgttattgccgaaagttttaaggacagtgatctt
ccccatttgcttatcctcaacgacaaggaagaggccgcgtactatctgaacgacttggaa
cggcttatcggtgaacagcacgtgctgttctatcccggtagctaccgcagaccctatcag
atcgaggaaaccgacaatgccaatgtgctgctccgtgccgaggtactgaacagaattaat
tcccggaaaaaacccgcccttatcgtcacttaccccgatgcgctgtttgaaaaagtggta
acgcggaaagaactggaaaggaataccctgaaaatgaaagtgggcgaaacactttctccc
gattttatcaatgaaatcctcttcgaataccgtttcaaaagagtcgatttcgtttcggaa
cccggggaattttcggtacgcggtggtattatagacgtattttccttttcgaacgacgaa
ccgtaccgcattgaattcttcggtgatgaaatagacagtatacgaacctttgatgtggaa
acacaactctccgtggaaaagctcaaaaaaataagcatcatccccaatgtagagaataag
acgctgagcgaatccagggaaagctttttaaaatatatccctgccaaaactgtcgttttc
cttcagaacaacgatatattatccgcccgtatagataaccttttcggtaaagcagaagaa
gccttcgcttccctttcggaaacggtaaaacatgcatctccgcaggaactgttctgcact
tccgaactgcttaacacacatctttcggccttcactcttgccgagatgggaaatcgcaca
cagcttccctttaaacaacgggaaactccggattatcatactttgatcagttttcacacg
aggccccagccctcatttaacaaacaattcgacctcctgatccgggaccttaaccaaaac
agtgaaaacggttacacgaactatattttctgcgtcagtgaacagcaggccaaacgcttt
cacgatatattcgaggaaatagaaggtgaagtacaatataaaaccgttgttttcccgatt
taccagggctttattgacgacgaccagaaaacggtctgttataccgaccatcagatattc
gagcgctatcacaaatttcacctcaagaacggctatgccaaaaaacaggcaattaccctg
aaagaactgacccacctggaaatcggcgattatgttacccatatcgatcacgggatcggt
aaattcggcggtttgcaaaaaatccaggtggaagggaaaccacaggaagccataaaactc
gtttacggagacggagatatcctctacgtaagcatacattcgctccacaaaataaccaag
tacaacggtaaggacggcaagcctcccaaaatctataaactgggaagcaacgcctggaaa
aacctgaagaaaaaaacaaaaacacgggtcaaggaaattgccttcagccttattgaactc
tatgccaaaagacgtgcacaggaaggttttccctatgcccccgacagctatctgcagcac
gaactcgaagcctctttcctctacgaagacactccggaccagagcaaagccacccaggat
gtcaagaacgatatggaaagtcaacatcccatggaccggcttatttgcggtgatgtgggc
ttcggtaaaaccgaagtagccatacgtgcagctttcaaggccgtagacaacagcaaacag
gtagccatcctggtgcctacaaccatcctggccttccagcattacaaaacattcagtgaa
cggctggaagacctgcccgtaaatatcgattacctgaaccgcttccgaacggccaaggaa
aaacgggaaatcctcgaaagactggcgtcgggtaaaaccgacattataatcggtacccat
caactggtgaacaaaaacgtgaagtttcacgacctggggcttcttatcgttgatgaagag
cagaaattcggtgttgctgccaaagaaaagctgaagaccctgaaggaaaacgtagatgtg
cttacacttacggctacgcccattccccgaacactgcaattcagtcttatggcagcaagg
gatctttcggtcattacaaccccgcctcccaaccgttatcccatagaaagccatgtcatc
cagtttaatgaagaggtcatacgcgatgccgtttcttacgagatacaacgtggcggacaa
atattttttattcacaaccggattgaaaacataaaggaagttgcagggatgatacagcgg
ctggttcccgatgccaagataggtatcggtcacggccagatggaaggaaaaaaactggaa
aagctgatgctcgcctttatgaacggggaatttgatgtactggtctccactactattgtg
gaaagcggactggatgttcccaatgccaacaccatttttataaacaacgccaacaatttc
ggactgagtgatcttcaccagatgcgcggccgtgtgggaagaagtaataaaaaagcattc
tgttattttataacaccgccatattccgccatgaccgaagatgcccggaaacgcatccag
gccctggaacagtttaccgaactgggaagcgggtttaacattgccatgaaagacctcgaa
atacgcggcgccggagacctgctgggcggggaacaaagcggttttatcaacgatatcggt
tttgacacctaccagaaaatactcagtgaagctatagaagaactcaaggaaaacgagttt
aaagacctctacagtgaaaacgagaaacccaggaattatgtcaaagatacccagatagat
actgatttcgaattgctcttcccggacgattatgtcaataacatcaccgaaaggcttaac
ctttacaaccagctgagcaccatgaccaacgaagaagagctggagcaatttgaagctgat
attaccgaccgcttcggtccgccccccttccaggtgaccgacctgctcaacagtgtacgg
ataaaatggatagcctcccggatgggactggaaaaagtagtgcttaaacacagaaaaatg
gtaggctatttcatttcagaccagcaaagcagtttttatcagagtgcaacttttaaacgg
gtactgaaagccgtacaacaacatcccgaacactgtaaaatgaaagaaaaacatacccgg
atgggaggactccggctcttactgaccttcgacaatatttcctcggtaaacaaagcatta
aaagcccttcgaccttttgtggttgaagaagaaatacatacagaagtgaaaaattaa
DBGET
integrated database retrieval system
