Sulfitobacter indolifex: DSM14862_01351
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Entry
DSM14862_01351 CDS
T08028
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sinl
Sulfitobacter indolifex
Pathway
sinl03030
DNA replication
sinl03410
Base excision repair
sinl03420
Nucleotide excision repair
sinl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM14862_01351 (ligA)
03410 Base excision repair
DSM14862_01351 (ligA)
03420 Nucleotide excision repair
DSM14862_01351 (ligA)
03430 Mismatch repair
DSM14862_01351 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinl03032
]
DSM14862_01351 (ligA)
03400 DNA repair and recombination proteins [BR:
sinl03400
]
DSM14862_01351 (ligA)
Enzymes [BR:
sinl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM14862_01351 (ligA)
DNA replication proteins [BR:
sinl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM14862_01351 (ligA)
DNA repair and recombination proteins [BR:
sinl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM14862_01351 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM14862_01351 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSM14862_01351 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM14862_01351 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UOA18579
LinkDB
All DBs
Position
cDSM14862:1369559..1371679
Genome browser
AA seq
706 aa
AA seq
DB search
MTSQIEVAALDRAQAETELTRLAALLNAANTAYHTEDAPEISDAEYDALKRRNAAIEARY
PDLKRDDSPTEQVGAPVAEGFGKVRHAVSMLSLANAFDAEEVTDFDARIRKYLGVEADAP
LAYTAEPKIDGLSLSLRYENGLLVQAATRGDGAVGENVTANARTIQDIPHQIDEAPDLLE
VRGEVYMSHADFAALNERQAERGGKTFANPRNAAAGSLRQLDAEITRARPLRFFAYAWGA
LSAPLAETQKGAIDRLAKLGFVTNPLTALCDGPSDMVAHYAKIEAQRATLGYDIDGVVYK
VDDLALQERLGFRSTTPRWAIAHKFAAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGG
VVVSNATLHNEDYIKGLDSKGAEIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRPKDA
APFVFPSVCPECGSDAIREPGDAVRRCTGGLICPAQAVEKLKHFVARGAFDIDGLGAKQV
EQFYHDGWIAEPADIFTLKERFGNGVQQLKNREGWGPKSADNLFQAIKDKRKIPMSRLIF
ALGIRHVGDAASNLIALHYGDWDSFETAMAEARGLEGPAWDDLIAVDGVGSVMAGSLVSA
FAQEAERASIDRLVAHLTVVPTERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGA
KVSGSVSAKTDILVAGPGAGSKAKKAADLGIETLDEDGWLALIEGQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcccagatcgaagtggcggccctggacagggcgcaggcagagacagaacttacc
cgattggcagcattgctgaacgcggcgaatacggcctatcacacagaggatgcacccgag
atttcggatgcggaatatgacgcgctcaagcgccggaacgcggcaatagaggcccgctac
cctgaccttaagcgggacgatagccctacagaacaagtcggcgcgccagtggccgaaggg
ttcggaaaagttcgccacgccgtgtcgatgctgtcacttgccaacgcctttgatgcagag
gaagtaaccgatttcgatgcccggatacgaaaataccttggggtcgaagccgatgcaccg
ctggcctatacagcggagcccaaaatcgacgggctgtcactttcgttacgctatgagaac
ggcttgctggttcaggcggccacccgcggcgatggcgcggtgggggaaaatgtcaccgcc
aatgcacgcaccattcaagacataccgcatcaaatagatgaggctccagatctgctagag
gtacgcggcgaagtctatatgagccacgccgatttcgcggcgttgaacgaacggcaggcg
gaaaggggcggcaaaacatttgccaacccgcgcaacgcggctgcgggatcgctgcggcag
ttggatgcggaaatcacccgtgcgcgtccactgcgctttttcgcctacgcgtggggcgcg
ctgtcggcaccattggccgaaacacaaaagggcgccatcgaccgtctggcgaaactgggc
tttgtcaccaaccctctcacagcactttgcgacggcccgagcgatatggtcgcccattac
gcgaagatcgaagcgcagcgtgccacgcttggctatgatatcgacggtgtggtctacaag
gtcgatgacctggcactgcaggaacggcttggctttcgctccaccacaccgcggtgggcg
atcgctcataaatttgccgctgaactggcctggacccggttggaaggcatcgacattcag
gttggccgcaccggggcgctttcccctgtggcgcggttgcagccggtcacggtgggcggt
gtcgtcgtttccaacgcgacgctgcataatgaggattacatcaagggtcttgacagcaaa
ggtgccgaaattcgcggcggcaaagacatccgcgtcggcgactgggtccagatttaccgc
gcgggcgatgtgatccccaaggtggcggatgtggacctgtcgaaacgccccaaggatgcg
gcgccgtttgttttcccctctgtctgtcctgaatgcggctctgacgcaatccgcgagccg
ggagacgcagtgcggcggtgcacgggcgggctgatttgcccggctcaggctgtggaaaag
ctgaaacatttcgtcgcccgcggggcattcgacattgatgggttgggtgccaaacaggtc
gagcaattttaccacgatgggtggatagcggaaccggcggatatctttaccttgaaagag
cgtttcggcaacggcgtccaacagttgaaaaaccgcgaaggttggggaccaaagtcggcg
gataacctatttcaagccattaaggataagcgcaaaattccaatgtcacggctgatcttt
gcccttggcatccgccatgtgggggatgcggcgtcaaaccttatcgcgctgcattacggt
gattgggacagttttgagaccgccatggccgaggcacgggggctggaaggccccgcatgg
gacgatctgatcgcggtcgatggtgtcggcagcgttatggcgggatcgctcgtctcggcc
ttcgcgcaggaggccgagcgcgcgtcaatcgaccgtttggtggcgcatttgaccgtcgtc
ccgactgagcgtcccgacaccgagggcagcccagtggcgggcaaaaccgtcgtttttacc
ggcaccttggaaaaaatgagccgagctgaggccaaagcgcgtgctgagcgtttgggggcc
aaggtttccgggtcggtcagcgcgaaaaccgacattttggtggccgggccgggcgcgggg
tccaaggcaaagaaggccgctgatttgggcatcgaaaccttggatgaggacggctggctt
gccttgattgagggtcaatga
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