Streptomyces incarnatus: ABB07_22285
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Entry
ABB07_22285 CDS
T09785
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sinn
Streptomyces incarnatus
Pathway
sinn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sinn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABB07_22285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinn03400
]
ABB07_22285
Enzymes [BR:
sinn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABB07_22285
DNA repair and recombination proteins [BR:
sinn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABB07_22285
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKJ12656
UniProt:
A0A0G3AF56
LinkDB
All DBs
Position
5015057..5018590
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAITAAADGNRMHIDLVGPPAARPFTVAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPAEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGQTADLNDVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADLELDADTLKLGMHAPETYRGDTARALADTKGWLADGWRAVFVTEGHGPAA
RTAEVLGGEGIAARLDADLGELSPSVVHVACGSIEYGFVDPALKLAVLTETDLSGQRATG
REGARMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRFQTDTEAKA
VLEGLREGAVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKRFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRVKRLYPGTVIKPAV
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLASVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
accgcggccgcggacggcaaccgcatgcacatcgacctcgtcggccccccggcggcccgc
cccttcacggtcgccgccctcgcccgcgaggcgggccgcccggtgctcgcggtcacggcg
acgggccgcgaggccgaggacctggcggccgccctgcgctccctgctgcccgccgagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctcgcccaccccagcgccgacgacccc
gagaccggccctgtctccgtcgtcgtcgcccccgtacggtccgtgctgcagccgcaggtc
aagggcctcggcgacctggagccggtgtccttgaggaccggccagaccgccgacctgaac
gacgtcgtggaagccctcgcggccgccgcctacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtgttcccgcccaccgaggaacacccg
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggcacccccgtgccgcgagctgctg
ctcaccgacgacgtccgggcacgcgcgcgtgctctcgccgaggagcacccggagctcggc
gaactcctgaacaagatcgccgagggcatcgcggtcgagggcatggagtccctcgccccc
gtcctcgtcgacgacatggaactgctcctcgacgtcctgcccaagggcgccatggccgtc
gtctgcgacccggagcgggtccgcacccgcgccgccgacctcgtggccacctcccaggag
ttcctgcaggcctcctgggcggccaccgccggcggcggtgaggccccgatcgacgtcggc
gccgcctccctgtggtccatcgccgacgtccgcgaccgcgcgcgcgagctggacatgatg
tggtggtcggtgtcgcccttcgcggccgatctcgaactcgacgcggacaccctcaagctc
ggcatgcacgcgcccgagacctaccgcggcgacaccgcgcgggccctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtcttcgtcaccgagggccacggcccggccgcc
cgcaccgcggaggtgctcggcggcgagggcatcgccgcccgtctcgacgccgacctcggc
gaactgagcccgtcggtggtgcacgttgcctgcggctccatcgagtacggcttcgtggac
ccggccctcaagctcgccgtgctcaccgagaccgacctgtccggccagcgcgccaccggc
cgcgagggcgcccgcatgcccgcccggcgccgcaagaccatcgacccgctcaccctggag
tcgggcgactacatcgtccacgaacagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccgcctctacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccgcctcggcggcgccgactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctctacagcgcc
cgcatggccgcccccggccacaccttcggggccgacacgccctggcagcgcgagctggag
gacgccttcccctacgccgagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtccgtccccatggaccgcctgatctgcggcgacgtcggttacggcaag
accgagatcgcggtgcgggccgccttcaaggccgtacaggacggcaagcaggtcgcggtc
ctggtgccgacgaccctgctggtgcagcagcacttcgggacgttctccgagcggtacgcg
cagttcccggtcagtgtgaaggcgctgtcccggttccagaccgacaccgaggccaaggca
gtcctggaggggctgagggagggcgcggtggacgtcgtgatcggcacccaccgcctgttc
tcctccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgaccatg
tccgccaccccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccacgcccccggaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagcggcagatcggcgcggccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgcgcggcggcgaggctccgcgagatcgtcccc
gaggcgcgcatcgccaccgcccacggccagatgtcggagtcggcgctggagcaggtcgtc
gtcgacttctgggagaagaggttcgacgtcctcgtctcgaccacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctcatcgtggagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgcgtcggccgcggccgcgagcgcggttacgcctacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcgcctggccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtcgccatgaaggacctggagatccgcggc
gccggaaacctcctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggccgtcgccgactaccggcgccagctggagaccggcgag
atcgaggaggaggcgccgctcgaggtcaagatcgagctgcccgtcgacgcccacgtgccg
cacgactacgcgcccggcgagcgcctgcgcctccaggcctaccgcgccatcgcctccgcc
aactccgaagaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgaaccggtcgagaacctcctgctggtggccggcctgcgcatgctcgcgcgcgcgtgc
ggcgtcggcgagatcgtcctccagggcaccaacattcgcttcgcaccggtggagttgcgc
gagtcccaggaactgcgggtcaagcgcctctaccccggtacggtcatcaagccggccgtc
caccaggtgctggtcccgcgcccgaagaccgcgaaggtcggcggcaagccgctggtcggc
cgtgaactgctgggctgggtcggggagttcctcgcctcggtcctggggtcgtag
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