Sinorhizobium sp. CCBAU 05631: SS05631_b61200
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Entry
SS05631_b61200 CDS
T05069
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sino
Sinorhizobium sp. CCBAU 05631
Pathway
sino03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sino00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SS05631_b61200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sino03400
]
SS05631_b61200
Enzymes [BR:
sino01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SS05631_b61200
DNA repair and recombination proteins [BR:
sino03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SS05631_b61200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASY60212
UniProt:
A0A249P3B7
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All DBs
Position
pSS05631b:1162537..1165089
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AA seq
850 aa
AA seq
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MGLETYREKRDFASTPEPKGGKARRSGNSFVVQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSPVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVILWDRGTWTPIGDARRGYAKGH
LDFELSGEKLGGRWHLVRMAGKPREKRENWLLIKGDDEAARSEQDPDILEERPESVLTGR
EIKDVAGEEPGWSSKTGRIRKRARGRKTAASPGQEPEAASNVPDPAKFKGAKRAPLPDFV
EPSLATLVASAPAGERWLHEIKFDGYRLQARIEAGRTKLLTRGGLDWTKRFGKALVSALQ
ALPVGTALIDGEVVVETGSGASDFSGLQADLSEGRSDRFRFYVFDLLYLDGYDLRALPLV
KRKELLGQLISEGDGLIRFSSHFEEEGSLVLRHACRLSLEGIVSKQRDAPYRAGRNKSWV
KSKCSARQEFVVAGYVPSTTSRKAIGSLVLGVYQGGKLHHVGRVGTGFTVAVAEELFKRL
DRLRTPESPFAARLAAEDARQVRYVRPELVAEVEFRAWTADGLLRHASFRGLREDKPARD
IVRETPKSAAVAPKAPRRTVKLTHPDRFYWPDEGVTKEGLADYYSEVWRFVGPHIVGRPL
ALVRCPNGITGETFFQKHAWKGLNPNIVLVNDPKDPPDEQLLSIRDLDGLMGLVQSAVLE
IHPWGSTVADWERPDTIIMDLDPGEDVPFEAVIEAALETAGRLKAAGLVPFVKTSGGKGL
HVVAPLKPKAEWPAVKAFTKLVADAMASDSPDRFVSTISKSKRRGKILVDYLRNQRGATA
VAPYSTRARPGAAVSMPLSWDELAPSIGPAYFTVENTPTRLASLHADPWADFRAAAVPLK
EAKAGRRRAA
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgggcctcgaaacctatcgggaaaagcgcgacttcgcctcgacacccgaaccgaagggg
ggcaaagcgcgtcgatccggcaacagtttcgttgtccagaagcacgacgccacgcggctg
cattacgacttccggctggagatggacggggttttgaagagctgggccgtcactaagggt
ccgagccccgttcccggcgagaagcgccttgccgttcacgtcgaggaccaccctctcgaa
tacggagatttcgaaggcacgatcccgaaaggcgaatatggcggcggtaccgtcatcctg
tgggatcgcggcacgtggacgccgatcggcgatgcccggcggggctacgcgaaaggccat
ctcgacttcgagctcagcggcgaaaagctcggcggccgctggcatctggttcggatggcc
ggcaagccgcgcgagaaacgggaaaactggctgctgatcaaaggcgacgacgaggcggcg
cgatcggagcaagaccccgatattctcgaggagcggccggagtcggttctgaccggccgc
gagatcaaggatgttgccggcgaagagccgggctggtcgtcgaagaccggccggatacgc
aagcgggctcgcggcaggaaaaccgccgcttcaccagggcaggagccggaagcggcttcg
aacgtcccagatcccgcgaagttcaagggcgccaagcgggctcctttgccggacttcgtc
gagccctcattggcgaccctcgtcgcctccgcgccggccggcgaacgctggctccacgaa
atcaagttcgatggctaccggttgcaggcgcggatcgaagccgggcgcaccaagcttctc
acccgtggcgggctggactggacgaaaaggttcggcaaggcgctggtgtcggcattgcag
gcgctaccggtcggaacggccttgatcgacggcgaggtcgttgtcgaaacgggctccggg
gcctccgacttttccggattgcaggccgacttgagcgagggtcgcagcgatcgtttccgc
ttctatgtcttcgacctgctctatctcgacggctacgacttgcgcgctctgcccctggtc
aaacgcaaggagctgctcggccagctgatcagcgaaggcgatggcctcatccgcttcagc
agccatttcgaggaggaaggcagcctggtgctgcgtcatgcctgcaggctgagcctcgaa
ggcatcgtctcgaagcagcgcgatgcgccctatcgtgcgggacggaacaaaagctgggtg
aaatccaagtgctcggcgcgtcaggagttcgtcgtcgccggctacgtgccgtcgaccacg
tcgcgcaaggcgatcggctcactcgtgctcggcgtctatcaaggcggcaagctccatcat
gtgggccgcgttggaacagggttcaccgtcgccgttgcggaggagctcttcaagaggttg
gaccgtttgcggacgcccgagagcccgttcgcggcgcggcttgcggcggaagatgcgcgc
caggtccgatatgtcaggccggagctcgttgccgaggtcgagttcagggcctggaccgcc
gacggccttctccgccacgcttcgttcaggggattgcgagaggataaacccgcccgcgac
atcgtgcgcgaaacgccgaagtccgcggcagttgcgcccaaggctccgcgtcggaccgtg
aaactcacccaccccgaccggttctactggccggacgagggtgtcaccaaagaggggctc
gccgattattactccgaagtctggcgctttgtcggcccccatatcgtcgggcgcccgctc
gctttggtcagatgccccaacgggatcaccggggagacgttcttccagaagcatgcctgg
aaggggctgaaccccaatatcgtgctcgtcaacgatccgaaggacccgcccgacgaacag
ctgttgagcatcagggatctcgatggcctgatggggctagtccagtccgcggttctcgaa
atccatccttggggctcgacggtcgccgattgggaaagaccggacacgatcataatggat
ctcgatcccggcgaggacgtgccgttcgaagcggtgatcgaagctgcgctcgagaccgca
ggccgcctgaaggcggccggccttgttcccttcgtcaagacatccggcggcaaggggctt
cacgtggtggcgccgttgaagcccaaggcggagtggccggccgtcaaggccttcaccaag
ttggttgccgatgcgatggcctccgacagtcccgaccggttcgtttcgaccatcagcaaa
tccaagcgccgcggcaagatcctggtcgactatctgagaaaccagcgcggcgcgaccgcg
gtggccccctattcgacgcgagcgcggccgggcgccgccgtctcgatgcccctctcctgg
gacgaattggctcccagcatcggaccggcctatttcacggtggagaacacgccgacgcgg
ctggcgtcgctgcacgccgacccatgggcggattttcgcgcggccgccgttccgctcaag
gaggcgaaggccgggcgaaggagggccgcgtaa
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