Sinorhizobium sp. CCBAU 05631: SS05631_c14700
Help
Entry
SS05631_c14700 CDS
T05069
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sino
Sinorhizobium sp. CCBAU 05631
Pathway
sino03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sino00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SS05631_c14700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sino03400
]
SS05631_c14700
Enzymes [BR:
sino01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SS05631_c14700
DNA repair and recombination proteins [BR:
sino03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SS05631_c14700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
SecA_DEAD
SSB
Motif
Other DBs
NCBI-ProteinID:
ASY56407
UniProt:
A0A249NSI1
LinkDB
All DBs
Position
1398354..1401878
Genome browser
AA seq
1174 aa
AA seq
DB search
MNSTMIPGLDAKRILSAAREVTIGPVPSGAEALILADLARSGAPVAYFLSDGQRIGDIEQ
VLGFVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRHKPHPEILLVTVNA
ALQKISPQDVIESLAFSARPGNQVQMDDLAARLERNGFERVPTVREVGEFAVRGGILDVY
VPGSGEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLTLNPMSEVSLTPETISHFRTRYL
SLFGAATREDALYQAVSEGRRYAGMEHWLPLFYDRLETIFDYLDGFRIVTDHLAREAAAE
RSKLILDYYEARQASASPGKSQISQGTPYKPVPPDLLYLSAKGFGAGLAERNAVRLSPFS
EHEGEARQVVTIEARQGVRWAKAAGEAEESDRARANVFDQAVKHIAEKRAKGSKVVISGW
SEGSLDRLLQVLAEHGLTNIRPVKALADLRSLKAGEAASAVLSLESGFETGDLVVIGEQD
ILGDRMVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLEL
VYADDAKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIA
AERHTRHAPVLVAQDGVYDEFAARFPYDETEDQLNSIEAVRDDLGGGRPMDRLVCGDVGF
GKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDL
ALTKKEVADGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVL
TLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQS
FYVCPRLSDLSEIHDFLRSDVPELKVAVAHGQMPATELEDIMNAFYEGRFDVLLSTTIVE
SGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKV
LQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEI
HDTGWSPQISVGTPVMIPEDYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPI
EVQHLLKIVYIKALCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGHIAKQGTHAKIRP
DQSIFFQRELVTPDKRLSGAAMVMTQLATLAKPA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgacgatgatccctggtcttgacgcgaagagaattctttctgccgcgcgggaa
gtgacgatcgggccggtaccctccggcgccgaagcgctgatccttgccgatctggcacgc
tccggcgcgccggtcgcctattttctatccgacggccagcggatcggggatatcgagcag
gtgctcggtttcgtggcgcccgacatcccggtcctcactttgccgggttgggactgtctg
ccctatgaccgcgtttccccgagcgccgacacttcggcgcgaaggctcgcggcactcagc
gccctgattgcgcatcggcacaagccgcacccggaaatcctgctggtgacggtcaatgcg
gcgctgcaaaagatctcgcctcaggatgtgatcgagagtctcgccttttcggcgcggccc
ggcaatcaggtgcagatggacgatcttgccgcgcggctggagcgaaacggcttcgagcgc
gtgccgaccgtgcgtgaggtcggggagtttgccgtgcgcggtggcatcctcgatgtctat
gtgccggggagcggcgagccgctcaggcttgatttcttcggcgacactctggaaacgatc
cgctccttcgatccggcgagccagcgaaccaccgggcaggtgcggtcgctcactctcaat
ccgatgagcgaagtgtcgctgacgccggagacgatcagccatttccgcacgcggtatctg
tcgcttttcggcgccgcgacgcgcgaggatgcgctttatcaggcggtctccgaaggacgc
cgctatgccggcatggagcattggctgccgctcttctacgatcgcctggaaacgatcttc
gactatctcgatggcttccgcattgtcacggaccacctggcgcgcgaagcggcggcggag
cggtcgaagctcattctcgactattacgaggcgcgccaggcctccgcatctcccggcaag
tcgcagatatcgcagggcaccccctacaagccggtgccgccggacctgctctatctcagc
gcgaaaggtttcggggccggcctagccgagcgcaatgccgtgcgcctgtcgccgttttcc
gaacatgagggcgaagcccgtcaggtcgtcaccatcgaggcgcggcagggggtgcgctgg
gccaaggccgcaggggaagccgaggagagtgaccgcgctcgcgccaatgtcttcgatcag
gccgtcaaacacatagccgagaagcgggcgaagggctcgaaggtcgtcatttccggctgg
tcggaaggttcgctcgaccgcctgcttcaggtgctcgccgagcacggtctcaccaatatc
cgtccggtgaaggcgctcgccgatctgcgctcgctgaaggcgggcgaggccgcatcagcg
gttttgagcctcgaatccggattcgagaccggcgatctcgtcgtcattggcgagcaggac
attctcggcgaccggatggtgcggcgctcgaagcgccgcaagcgcggcgccgacttcatc
gccgaagtgacggggctcgacgagggcagctacgtcgtgcatgccgaacacggcatcggc
cgcttcgtcggcttgcgcacgatcgaggccgccggcgcaccgcatgattgcctggagctc
gtctatgccgacgatgcgaagctgtttctgccggtggagaacatcgagcttctgtcgcgc
tacggctccgaggggaccgatgcgatcctcgacaagcttggcggtgtcgcctggcaggcg
cgcaaggcgaagctcaagaagcggctgcttgacatggccggcgggctcattcgcatcgct
gccgagcggcacacgcggcacgccccggtcctcgttgcgcaggacggcgtctatgacgag
ttcgcagcccgcttcccctatgacgagaccgaggatcagctgaactcgatcgaggcggtc
cgcgacgatctcggcggcggccggccgatggatcgcctcgtctgcggcgacgtcggcttc
ggcaagaccgaggtggcgctgcgtgccgccttcatagcggcgatgaacggcgtgcaggtt
gccgtcgtcgtgccgacgaccttgctggcgcggcagcatttcaagaccttttccgatcgc
ttccgcgggctgccgatccgcattcagcaggcctcgcgcctcgtcggctcgaaggatctg
gcgctgacgaagaaggaagtcgccgacggcaagacggatatcgtcgtcggcacccacgcg
ctgctcggctcctcgatcaagttcgccaatctcggcctgctgatcatcgacgaggagcag
cacttcggcgtcaagcacaaggaacgcttgaaggagctgaagaccgacgtccatgtgctg
acgctctcggcgacgcccattccgcgcacgctgcagcttgcgctgaccggcgtccgcgaa
ttgtcgctgatcaccacgccgccggtcgaccgcatggcagtcagaaccttcatctcgcct
ttcgacgcgctggtgatccgcgagacgctgatgcgcgagcactatcggggcggccagagc
ttctatgtctgcccgcggctgagcgacctttccgagatccacgacttcctgagatccgac
gtgccggaactgaaggtcgcggtggcgcacggccagatgccggcaaccgagctcgaagac
atcatgaatgccttctacgaaggccgctttgacgtgcttctgtcgacgacgatcgtcgag
tcggggctcgacgtgccgacggccaacacgctgatcgtgcaccgcgccgacatgttcggc
ctggcgcagctctatcagcttcgcgggcgggtcggacgctccaaggtgcgcgccttcgcg
ctcttcacgcttccggtcaacaagacgctgaccggcccggcggaacgccgtctcaaggtg
ctgcagtcgctcgacacgctcggcgccggtttccagcttgccagccacgacctcgacatt
cgcggcgccggcaacctgctcggcgaggagcaatccggacacataaaggaggtcggtttc
gagctctaccagcagatgctggaggaggcggtcgccgagctcaagggtgaagaggaaatc
cacgacaccggctggtcgccgcagatttccgtcggcacgccggtgatgatcccagaggac
tatgttcccgatctcaatctgcggctcggcctctatcgccgcctcggtgaactgaccgac
ctcaaggagatcgacggtttcggcgccgaactgatcgaccgctttggcccgctgccaatc
gaggtccagcacctgctgaagatcgtctacatcaaggcgctctgccgcacggcgaatgtc
gaaaagctcgacgccgggccaaagggcgtcgtggtgcagttccgcaacaaggaatttccc
aatccggccgcccttgtcgggcatatcgccaagcagggaacgcacgcaaagatcaggccc
gaccagagcatctttttccagcgcgaactcgtcacgccggacaagcgcctctcgggcgcg
gccatggtgatgacccagctcgcgacgctcgccaagccagcgtga
DBGET
integrated database retrieval system
