Sulfurovum indicum: IMZ28_02090
Help
Entry
IMZ28_02090 CDS
T07193
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sinu
Sulfurovum indicum
Pathway
sinu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sinu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMZ28_02090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinu03400
]
IMZ28_02090 (mfd)
Enzymes [BR:
sinu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMZ28_02090 (mfd)
DNA repair and recombination proteins [BR:
sinu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IMZ28_02090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
UvrB_inter
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QOR62290
UniProt:
A0A7M1S7G9
LinkDB
All DBs
Position
398196..401183
Genome browser
AA seq
995 aa
AA seq
DB search
MVYQSNIYEYLEHSDSKHLLICKDDKEAKQISDVANLLGYNTFVLPDIRVSVGEDLRAYA
EEVQALFIQLAGYAKSKRKKLLVSPVRTLLLPFPKAEFFESMMIEFGESLDIPGLKEKLY
QWGYHFTDIAAQKGEVSFRGDIIDIYPITSEKPYRISLFDEEVETIHYYDETSQKRLGDE
LESLEITPAFLALDKEEHEALRNRCEHSPYDTFVKDIDSLGLWHLDDLAQNAFEMFDAIL
TANLDEELQEIYELDRPMVERKHFLLPIIPEATKYRDLEVVDPNKLLESHKGKQITILAK
NESIVRGSQLSFFENIEFVYQDGIVNILGQERLILSLNKPFKRKKVKKATIILDELKPGD
YVVHENHGVGIFRGIEKREVLGATSEFVTIMYQNEDTLLIPVSNLEVIDRYVAEGGALPV
LDRMGKASFKKLKEKVKEKLFAIASQIINLSAQRHLKKGIVLKTPEEHALFMSKAGFVHT
EDQERAIFEMLEDMQSGRMMDRLLSADVGFGKTEVAMNGIFVAVKNGYQAMMIAPTTLLS
AQHYKSLKERFYGEEISVAKLDRFSTTKEKNSVLKGLAEGSIDVVVGTHALLKAKFKSLA
LVVIDEEHKFGVKQKEALKEMSIDVHLLSMSATPIPRSLNMALSQVKSFSEILTPPTERQ
GVRTFVKSYDDKVIKEAILRELRRGGQIFYVFNSIAGIEEKKKQLLDILPKLRIAVLHSK
ISAKETEDEMLKFEDGEYDVLLSTSIVESGIHMPHANTMIVDGADSFGIADLHQLRGRVG
RGGKEGYCYFMVTDKERLTDNAKRRLLALETHSDLGSGAVLAFHDLEIRGGGNIIGEAQS
GHIKQIGYSLYLRMLEDAIKELSGQDKEVSQQIDMKLSIQAYLNEELIEEDRLRLELYRR
LSLCESAGEVYEIEAEIADRFGKPDTVTRQFIDVMVMKVLARQQGISKVSSYGENVFMEF
AEEGKERVVLKARSKDDDDIIATAMNYLKQNSENI
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
ttggtatatcagagcaatatttacgagtatctggaacactccgacagtaaacaccttcta
atctgcaaagatgataaagaggcaaagcagatttcagatgtagcaaatcttctggggtac
aatacttttgttctgcctgatatccgtgtgagtgtgggagaggatctgcgcgcttacgca
gaagaagtacaggcactctttatacagctggcaggatatgccaaaagtaagagaaaaaaa
cttcttgtctctccggtaagaacactgttgcttcctttccccaaagcagaattttttgag
agtatgatgattgaattcggggagagtcttgatattcccggcttgaaggagaaactctat
cagtggggataccactttacagatattgccgcacaaaagggtgaagtctctttccgtggg
gatattattgatatttatcctattaccagtgagaaaccatatcgtatttcactctttgat
gaagaggtggagacgattcactattatgatgaaacctcccaaaaacgtcttggagatgag
ttggagtctctggagatcacaccggcatttctggcattggacaaagaagaacatgaagcg
cttagaaatcggtgtgagcacagtccttatgatacttttgtgaaagatatagattcgctt
ggactatggcatcttgatgatcttgcacaaaatgcttttgaaatgtttgacgcaatattg
acagctaatcttgatgaagagctacaggagatctacgaacttgacagaccgatggtagag
cgtaaacatttcctgttaccaattattcctgaggctacaaagtaccgtgatcttgaagtg
gtcgatccaaataaactactggaatctcataaagggaagcagatcacgatcctggcaaag
aatgaaagtatcgtccgcggttcgcaattaagcttttttgagaatattgaatttgtttat
caggatggtatagtcaatatcctgggacaggagagacttattctttcactgaataaacct
tttaagcgaaagaaggtcaaaaaagcgacaattattctcgatgagctcaaaccgggtgat
tatgtagtacatgagaaccatggtgtagggatctttcggggcattgaaaagcgtgaagtc
ctgggggcaacttcggagtttgtaaccattatgtaccagaatgaagatacgctgctcatt
ccggtaagcaatcttgaggtcatcgaccgctatgtagcagaaggcggggcacttccggtt
cttgaccgtatgggcaaggcaagcttcaaaaagcttaaagagaaggtcaaggagaaactc
tttgcaatcgccagccagatcatcaatctttcggcacagcgtcatctcaaaaagggaatt
gtgttgaaaacccctgaagagcatgctctctttatgtccaaagcgggatttgtacatacc
gaagatcaggaacgggcaatctttgaaatgcttgaagatatgcagtcgggtcgtatgatg
gacagactgctttcagcggatgttggttttggaaagacggaagttgcgatgaacggaata
tttgttgcagtaaagaacggctatcaggcgatgatgatcgcaccgaccacgctgctgagt
gcacagcactacaaaagtctcaaggagcgtttttacggtgaagagatctccgtagccaaa
ctcgatcgtttctctacgaccaaagagaaaaacagcgtactcaaaggtttggctgaaggc
agtatcgatgtggtggtgggaacccatgcgctgcttaaggcaaagtttaagagtcttgcc
ctggtggtgatcgatgaggagcataagttcggggtcaagcagaaagaggcactcaaggag
atgagtattgatgtgcatttgctttctatgtcagcgactcctattccccgctcactcaat
atggcactctcacaggtcaaaagcttttcagagattcttacacctccgactgaacgtcag
ggggtacgtacctttgtaaaaagttatgatgacaaagtgattaaagaggcgatcttgcgc
gaactgcgccgtggtggccagatcttctatgtattcaactctattgcagggatcgaagag
aagaaaaaacagttgcttgatatcttgccaaaacttcgtattgctgtgctccattccaag
atttcagcaaaagagaccgaagatgagatgctgaaatttgaggatggggagtatgatgta
ctgctctctacttccattgtcgaatcgggtattcatatgccacatgcaaatacgatgatc
gttgacggggcggacagtttcggtattgccgacctgcatcaactgcgtggacgtgtcgga
cgtggaggtaaagagggctactgttatttcatggtgacagacaaagagcgtcttacagac
aatgccaaacgaagactgcttgcactcgagacacactccgatcttggaagcggtgcggtc
cttgcttttcatgaccttgagatacgcggcggagggaatatcatcggtgaggcacaaagc
ggccatattaaacagatagggtacagcctctacctgcgtatgcttgaagatgctattaaa
gaattaagcggacaggataaggaggtaagccagcagatcgatatgaagctttcgatccag
gcgtatctgaatgaagagcttatcgaagaggataggttgcgtcttgaactttatcgtcgt
ctttctctttgtgagagtgcaggtgaagtctatgagatcgaagcagagattgcagaccgg
tttggcaaaccggatactgttacacgacagttcattgatgtgatggtcatgaaagtactt
gcacgtcagcaggggatttccaaggtttcatcctatggagagaatgtctttatggagttt
gcagaggaaggtaaagagcgtgttgtgcttaaagcccgaagcaaggatgacgatgacatt
attgcaaccgctatgaactatctgaagcaaaacagtgaaaacatttaa
DBGET
integrated database retrieval system
