Shewanella inventionis: K8B83_11165
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Entry
K8B83_11165 CDS
T07895
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8B83_11165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinv03400
]
K8B83_11165 (mfd)
Enzymes [BR:
sinv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8B83_11165 (mfd)
DNA repair and recombination proteins [BR:
sinv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K8B83_11165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UAL41483
LinkDB
All DBs
Position
complement(2516934..2520458)
Genome browser
AA seq
1174 aa
AA seq
DB search
MKQYSVLTPPSVKKGQQMQTLATLGGVSQAITLAKLIQQHSGTSIIVTHDTPSALSLEVE
LSYLLQNSNINVCLFPDRETLPYDNFSPHQDLISQRLETLANIGQSQHNVVIVPVNTLMV
RLPPKSFMTANVMVLNKGDTYSLQQARQHLTDTGYHLVEQVYEHGEFAIRGSIIDIFPTG
SRQPLRIELFDDEVESIRFFDVDTQRSGMARDAIRMLPAKEFPTDSNAIEGFRQRYRRRF
EVISKEAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPQNSQLITLGDIEKASQQH
LHEVSVRYEDRRIDPLRPLLTPKELYLLQDELFAAFKPLTRTQIIQQPHTNDTDNTGQPL
AAIDLPAHALVANVEKLPDINANHKLKQPLHALQEYSAGQAQLLFSAESEGRREALLELF
AKIGIKPKLFAHLNEYLDAKDSIGLIVSPLSRGCVLTDVPKGPVSVICETELFGQRISQQ
RRREKQKQVSSDVLVKNLAELKVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLEYSGG
DKLYVPVSSLHLISRFNASGEGEAHLNKLGNETWAKAKKKAIERIRDVAAELLDVYARRQ
ARPGEAMTIDEQEYAQFSQGFPFEETVDQESAIHAVLADLQAPLAMDRLVCGDVGFGKTE
VAMRAAFVAVNAGKQVVVLVPTTLLAQQHFENFKDRFADWPIVVDVMSRFRTTKEQNSIV
EQLSAGKVDILIGTHKLLSAEANFDNLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTA
TPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDQATVREAILREILRGGQVYYLH
NNVDTIEKTAQNIRDLLPEARVVTAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGID
VPSANTIIIDRADMFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKRMTTDARKRLEAIDAL
EDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKEGKEPSLAY
MMSAKAEIDLRIPALLPEDYVSDVNMRLSLYKRIANCENDNMLDELKVEFIDRFGMLPDP
TRNLMAITLFKHQATALGITKIEMHAKGGSVEFGQENCVDPMFIIGLLQNQPQIYRMDGP
NKLKFTIPAETSKERLELVNTLLEQFAKHQTGDK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatatagtgtactcacgccaccgagtgtaaaaaaaggccaacaaatgcaaact
ttggcaacattaggtggggtttctcaagccatcaccttagccaaattaattcaacaacat
tcgggcaccagcatcatagtcacccatgacacgccgagtgccctatcactagaagtcgaa
ttaagctatttgttacaaaacagcaatattaatgtgtgcttgtttccagacagagaaacc
ttaccttacgacaacttttcaccgcatcaagacttaatatcacaacgtttagaaacctta
gccaacattggccaaagccagcataatgtggtgattgtgccggtaaacaccctaatggtt
cgcctgccgcccaaatcgtttatgaccgccaatgtgatggtactaaataaaggcgacacc
tacagcttacaacaagcgcggcaacacctaaccgacacaggctatcatctcgttgaacaa
gtatacgaacacggcgagtttgctattcgcggttctatcattgatattttccccacaggt
tcacgccaaccgctgcgcattgaactatttgatgatgaagtcgaatcaatccgttttttt
gatgtagacactcaacgctcaggcatggctcgcgatgccattcgcatgctacccgcaaaa
gaatttccaacagacagcaatgccatcgaaggctttaggcaacgctatcgccgccgtttt
gaggttatttctaaagaagctgaatccgtttatcaattagtgagccgtaatttaatgccc
gcaggtattgaaaattacttacctttgttttttgatgacacggcaaccttatttgactat
ttgccacaaaacagccaactcatcacactcggtgatatcgaaaaagccagtcaacagcat
ttacatgaagttagcgtacgctatgaagatcgacgcatcgacccactcaggccactctta
acgcccaaagagctttacctgctgcaagatgaattatttgccgcatttaaacccttaact
cgtacgcaaattattcagcagcctcatacaaatgacacagataacacagggcagccatta
gccgctatcgatttgccagcacatgctctggtcgccaatgttgaaaaactgccagacatc
aatgccaatcacaaactcaaacagccattgcatgcattacaagaatacagtgcaggccaa
gcacagttactgttcagtgccgagtcagaaggtcgtcgcgaagcattgcttgagctgttt
gccaaaattggcattaagcctaaactgtttgctcatttaaatgagtaccttgacgccaaa
gacagcataggcttaatcgtttcgccgctgagtcgtgggtgcgtgttaacggatgttccc
aaagggcctgtcagtgttatttgcgaaaccgagttgttcggccaacggatctcacaacaa
cgccgacgcgaaaagcaaaaacaagtcagctcggatgtattagttaaaaacttagctgaa
ctcaaagttggccagcccatagtgcatttagagcatggcgttgccttgtatcaaggttta
gaaacccttgatacaggtggactggttgccgaatacttaaaacttgaatattcaggcggc
gataaactctatgtacccgtgtcgtcactacacctaatcagccgttttaacgccagtggc
gaaggtgaagctcacctcaataaattaggcaacgaaacctgggccaaagccaagaaaaaa
gccatcgagcgtattcgcgatgtcgcagcagaattactggatgtatatgcaaggcgtcag
gctcgccccggtgaagcaatgacaatcgatgagcaagagtacgcccagtttagtcaaggt
ttcccatttgaagaaaccgtcgaccaagaatcggctattcacgcagtattagcagactta
caagcgccactggccatggaccgcctagtgtgtggtgatgtaggttttggtaaaacagaa
gtcgccatgcgcgccgcttttgtcgccgtaaatgccggcaaacaagtggtagtgctagtg
ccaaccaccctgcttgcccaacaacattttgaaaactttaaagaccgttttgccgactgg
ccaatcgtcgtcgacgtcatgtcgcgctttagaacaactaaagagcaaaacagtattgtt
gagcaattatcagcaggtaaagtcgacatcttaatcggcacccataaattgttgtcagcc
gaggcaaactttgacaacctaggcttactgattatcgacgaagagcaccgctttggtgta
cgtcaaaaagagaaaattaaagcattacgggctaacgtagacattttaacgctaaccgcc
acgcctattccgcgaaccctaaacatggccatgtcgggcatgcgcgatttatcgattatc
gctacaccacccgctaaacgcttagccgtaaaaacctttgttcgcgaatacgaccaagct
acggttcgtgaggccatactgcgtgaaattctgcgtggtggtcaggtgtattacttacac
aacaatgtcgacactatcgaaaaaacagcacaaaacattcgtgatttactccctgaagcc
cgtgtcgtcaccgctcacggacaaatgcgcgagcgcgatctcgaaaaagtcatgtcagac
ttttaccaccagcgcttcaatgtattggtgtgtaccaccatcatagaaaccggcattgac
gtaccaagcgccaacaccattattatcgatcgtgcagacatgtttggtttagcccagcta
caccaattacgtggccgtgttgggcgttcacaccaccaagcctatgcctacatgatgact
ccgcaccctaaacgcatgacaacagacgcccgcaaacgcctagaagccatcgacgcatta
gaagatcttggcgccggctttatgcttgccacccaagatttagaaattcgcggcgcaggc
gaattactcggtgatgagcaaagcggccacatttcaaaaattggttttagcttatacatg
gaaatgctcgaatctgcggtaaaagccttaaaagaaggcaaagagccgtcgctcgcctac
atgatgagtgccaaagcagaaattgacttacgcattccagccctactgccagaagactat
gtcagtgatgtgaatatgcgtttatcactttataagcgcatagccaactgcgaaaacgat
aacatgctcgacgagctcaaggttgaatttatcgaccgctttggcatgttacctgaccca
acccgcaatttaatggccattaccctgtttaaacatcaagcaaccgcactgggtatcact
aaaattgaaatgcatgccaaaggtggcagtgtcgaatttggccaagaaaactgcgtcgat
cctatgtttattattggtttgttgcaaaaccaaccacaaatctatcgaatggacgggcca
aataagttaaagttcaccattcctgctgaaacaagcaaagaacgacttgaattagtcaac
accttgcttgaacagttcgctaaacatcaaactggagacaaatag
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