Streptococcus iniae ISET0901: DQ08_02960
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Entry
DQ08_02960 CDS
T03285
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
siq
Streptococcus iniae ISET0901
Pathway
siq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DQ08_02960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siq03019
]
DQ08_02960
03009 Ribosome biogenesis [BR:
siq03009
]
DQ08_02960
Enzymes [BR:
siq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DQ08_02960
Messenger RNA biogenesis [BR:
siq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DQ08_02960
Ribosome biogenesis [BR:
siq03009
]
Prokaryotic type
rRNA helicases
DQ08_02960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AHY15439
LinkDB
All DBs
Position
581992..583623
Genome browser
AA seq
543 aa
AA seq
DB search
MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTDDNIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVQQPE
LAIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEMGYLSMIETLTKK
QMLPLKPATAEEAFQAKKKIALKKIERDFADETIRSNFDKFKGDAIQLASEFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVGGGHGGGKKGKGGRGRDNRGRGGRDGDRRGGY
RGDRNRDDRDNDRRRNKRDKRDNHDASASGSRKPKRNAKEFYNKDKKSGNKKDSGFVIRH
KGE
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaattaaacttatcagaagacatccaatcagctgttgtaacagcaggt
tttgaaaaagcatctcctattcaggaaatgactattccattagctttggaaggtaaggat
gttattggtcaggctcaaacaggaactggtaaaacagctgcatttggtcttccaaccttg
aataagattcgcacggatgacaatatcatccaagcattagtgattgcaccaacgcgtgaa
ttagcggtacaaagtcaagaagaacttttccgttttggtcgtgataaaggtgttaaagtt
cgctctgtatatggcggatcaagtattgataaacaaattaaagcattgaaatccggtgct
catattgttgttggtacaccaggtcgtttactagaccttatcaaacgtaaagcattgaaa
ctagaacatgttgaaacattgattcttgatgaagctgatgaaatgttaaacatgggcttc
cttgaagatattgaagctattatcagtcgtgttcctgaagaacgtcaaacgctcctattt
tcagcaacaatgcctgctccaattaaacaaattggtgttaagttcatgaaaaatcctgaa
catgttcaaattaaaaacaaagaattaacaaatgttaatgttgaacaattctacgttcgt
gttaaagaacaagaaaaatttgacaccatgacacgtcttatggacgttcaacaaccagaa
cttgctattgtttttggtcgtacaaaacgtcgtgttgatgaaattacccgtggtcttaaa
ttacgtggtttccgtgcagaaggtattcatggagaccttgatcaaaacaaacgtttacgt
gttattcgtgattttaaaggggaccaaattgatattttagttgcaactgacgttgctgcg
cgtggacttgatatttcaggagttactcacgtttataactacgacatcactcaagatcca
gaaagttatgttcaccgtattggtcgtacgggtcgtgctggtaaaacaggtgagtctatt
acttttgtatcaccaaacgaaatgggttacttgtcaatgattgaaacattgactaaaaaa
caaatgcttccactgaaacctgcaacagcagaagaagcattccaagcgaaaaagaaaatt
gctcttaagaaaattgaacgtgactttgctgatgagactattcgttcaaactttgacaaa
ttcaaaggagatgcaattcaattagcttcagaatttacacctgaagaattagcgctttat
atcttgagtttaaccgttcaagatccagacaccctaccagaagttgaaattgcacgtgaa
aaaccattaccatttaaatatgttggtggtggtcatggcggtggcaaaaaaggtaaaggc
ggccgtggtagagataaccgtggacgtggtggccgtgatggtgaccgtcgtggtggttac
cgtggtgatcgtaaccgtgatgaccgtgataatgaccgtcgtcgcaacaaacgtgataaa
cgtgacaaccatgatgcaagtgctagtggtagccgcaaaccaaaacgtaatgcaaaagaa
ttttacaataaagacaaaaagtctggtaataaaaaggattcaggtttcgttattcgtcat
aaaggtgaataa
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